miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 3' -61.2 NC_006151.1 + 2290 0.67 0.608858
Target:  5'- gGCGCCcGCGGCggcgaCGGCGCccggggucagcaccaGCgggGCGGc -3'
miRNA:   3'- -CGCGGuCGCUGa----GCCGCGa--------------CGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 2589 0.71 0.404515
Target:  5'- cGCGCUGGCGGua-GGCGCgcgGCggcaGCGGg -3'
miRNA:   3'- -CGCGGUCGCUgagCCGCGa--CGa---CGCC- -5'
29590 3' -61.2 NC_006151.1 + 2682 0.73 0.292794
Target:  5'- gGCG-CAGCGGCUCGGCcccggGgUGCagGCGGg -3'
miRNA:   3'- -CGCgGUCGCUGAGCCG-----CgACGa-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 2799 0.66 0.696464
Target:  5'- cGgGCCAGCG-CaCGGCGCacuggGCgGcCGGg -3'
miRNA:   3'- -CgCGGUCGCuGaGCCGCGa----CGaC-GCC- -5'
29590 3' -61.2 NC_006151.1 + 3144 0.74 0.27986
Target:  5'- gGCGCCcucGGCgGGCUCGGCGCagaGCUccucguggggcaGCGGg -3'
miRNA:   3'- -CGCGG---UCG-CUGAGCCGCGa--CGA------------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 3264 0.71 0.380124
Target:  5'- gGCGCC-GCGGCgcgCGGCGaugUGCgccaggGCGGc -3'
miRNA:   3'- -CGCGGuCGCUGa--GCCGCg--ACGa-----CGCC- -5'
29590 3' -61.2 NC_006151.1 + 3697 0.68 0.575454
Target:  5'- gGCGCgCGGCGcuucuucuugcgccGCUCgGGCGCUggguccgggccgGCgGCGGg -3'
miRNA:   3'- -CGCG-GUCGC--------------UGAG-CCGCGA------------CGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 3792 0.69 0.501737
Target:  5'- gGUGCUggAGCugGACUUGGUGCUGgaGCuGGa -3'
miRNA:   3'- -CGCGG--UCG--CUGAGCCGCGACgaCG-CC- -5'
29590 3' -61.2 NC_006151.1 + 3889 0.69 0.500805
Target:  5'- gGCGCCGGCGcugggacgacgagGC-CGG-GCUGCU-CGGg -3'
miRNA:   3'- -CGCGGUCGC-------------UGaGCCgCGACGAcGCC- -5'
29590 3' -61.2 NC_006151.1 + 3969 0.7 0.438528
Target:  5'- cCGCgCGGCGGcCUCGGCGagccgGCcGCGGc -3'
miRNA:   3'- cGCG-GUCGCU-GAGCCGCga---CGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 4337 0.7 0.456136
Target:  5'- cGCGgCGGCGAaggCGGCGCggacGCGGg -3'
miRNA:   3'- -CGCgGUCGCUga-GCCGCGacgaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 5099 0.72 0.356737
Target:  5'- gGCGCCggcggagacgguGGCGGCcCGGCGCggGCgaGUGGg -3'
miRNA:   3'- -CGCGG------------UCGCUGaGCCGCGa-CGa-CGCC- -5'
29590 3' -61.2 NC_006151.1 + 5238 0.7 0.465082
Target:  5'- aGCGCCGcGCGGCggCGGCGgggGCccgggggGCGGa -3'
miRNA:   3'- -CGCGGU-CGCUGa-GCCGCga-CGa------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 5350 0.71 0.404515
Target:  5'- gGCGCCcucuccggcGCGGCgccggCGGgGCUGUcucUGCGGg -3'
miRNA:   3'- -CGCGGu--------CGCUGa----GCCgCGACG---ACGCC- -5'
29590 3' -61.2 NC_006151.1 + 5693 0.69 0.483242
Target:  5'- cGUGCCGGCG-CUgCGGCcaccGCUGCUGg-- -3'
miRNA:   3'- -CGCGGUCGCuGA-GCCG----CGACGACgcc -5'
29590 3' -61.2 NC_006151.1 + 5879 0.67 0.637506
Target:  5'- cCGCCGGgGGCccCGGCcucuGCcGCUGCGa -3'
miRNA:   3'- cGCGGUCgCUGa-GCCG----CGaCGACGCc -5'
29590 3' -61.2 NC_006151.1 + 6080 0.66 0.686717
Target:  5'- aGCcCCGGCGGggCuGCuGCUGCUGCuGGg -3'
miRNA:   3'- -CGcGGUCGCUgaGcCG-CGACGACG-CC- -5'
29590 3' -61.2 NC_006151.1 + 7650 0.69 0.483242
Target:  5'- cGCGCCucGCG-CUCGGCGCgcGCUcCGa -3'
miRNA:   3'- -CGCGGu-CGCuGAGCCGCGa-CGAcGCc -5'
29590 3' -61.2 NC_006151.1 + 10203 0.72 0.334379
Target:  5'- gGCGCgGGCGGCggcugcagaGGCgGCUGCggacGCGGa -3'
miRNA:   3'- -CGCGgUCGCUGag-------CCG-CGACGa---CGCC- -5'
29590 3' -61.2 NC_006151.1 + 10623 0.66 0.697436
Target:  5'- cGCGCCcGCGugcGCUcgugcCGGCGCggcauccccgcccagGCgGCGGg -3'
miRNA:   3'- -CGCGGuCGC---UGA-----GCCGCGa--------------CGaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.