miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 5' -54.2 NC_006151.1 + 139087 0.66 0.934016
Target:  5'- cGCCuGGGGGCGCgcaugGCGCuGUucacgACCc -3'
miRNA:   3'- cCGGcUCCUCGUGaaa--CGCGuCA-----UGG- -5'
29590 5' -54.2 NC_006151.1 + 91758 0.66 0.934016
Target:  5'- gGGCuCGGGcGGGCGgUgUGCGcCAG-ACCa -3'
miRNA:   3'- -CCG-GCUC-CUCGUgAaACGC-GUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 73825 0.66 0.934016
Target:  5'- cGCCGAGGuGguCg--GCGCAG-GCa -3'
miRNA:   3'- cCGGCUCCuCguGaaaCGCGUCaUGg -5'
29590 5' -54.2 NC_006151.1 + 65440 0.66 0.934016
Target:  5'- aGGCCGGGaacauGAGCug---GCGCAGcggcGCCg -3'
miRNA:   3'- -CCGGCUC-----CUCGugaaaCGCGUCa---UGG- -5'
29590 5' -54.2 NC_006151.1 + 33203 0.66 0.933509
Target:  5'- cGGCCGGcgcccccGGAGCAC---GCGgGGcGCCc -3'
miRNA:   3'- -CCGGCU-------CCUCGUGaaaCGCgUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 82417 0.66 0.933509
Target:  5'- cGGCCccgaGAGGcgcgGGCGCUcgcgcggGCGCugcacaaAGUACCa -3'
miRNA:   3'- -CCGG----CUCC----UCGUGAaa-----CGCG-------UCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 116949 0.67 0.928832
Target:  5'- aGGuuGAGGGGC-----GUGCAGUugACCu -3'
miRNA:   3'- -CCggCUCCUCGugaaaCGCGUCA--UGG- -5'
29590 5' -54.2 NC_006151.1 + 35602 0.67 0.928832
Target:  5'- gGGCgGGcucuccucGGGGCGCUUauaaGCGCGGUcuCCa -3'
miRNA:   3'- -CCGgCU--------CCUCGUGAAa---CGCGUCAu-GG- -5'
29590 5' -54.2 NC_006151.1 + 31749 0.67 0.928832
Target:  5'- cGCCGGGGAcGCGCcugcgGCgGCGGgcgcgcGCCg -3'
miRNA:   3'- cCGGCUCCU-CGUGaaa--CG-CGUCa-----UGG- -5'
29590 5' -54.2 NC_006151.1 + 54415 0.67 0.928832
Target:  5'- cGCCGAGGcgcuggcgcGGCGCUUcgGCGacgaGGcGCCc -3'
miRNA:   3'- cCGGCUCC---------UCGUGAAa-CGCg---UCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 104181 0.67 0.928832
Target:  5'- cGCCGAGcGcGCGCUcgGCGCcaacGCCg -3'
miRNA:   3'- cCGGCUC-CuCGUGAaaCGCGuca-UGG- -5'
29590 5' -54.2 NC_006151.1 + 21622 0.67 0.9283
Target:  5'- aGGCCcgcGGGAGCGuccgGCcguucuuGCGGUACCa -3'
miRNA:   3'- -CCGGc--UCCUCGUgaaaCG-------CGUCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 17145 0.67 0.923403
Target:  5'- cGGCC-AGGAGCACcugGuCGCAGa--- -3'
miRNA:   3'- -CCGGcUCCUCGUGaaaC-GCGUCaugg -5'
29590 5' -54.2 NC_006151.1 + 49166 0.67 0.923403
Target:  5'- aGGCCuGGGcGCGCc--GCGgGGUGCUg -3'
miRNA:   3'- -CCGGcUCCuCGUGaaaCGCgUCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 103776 0.67 0.923403
Target:  5'- uGCgCGAgucGGAGCGCUggcgGCGCuGcagGCCg -3'
miRNA:   3'- cCG-GCU---CCUCGUGAaa--CGCGuCa--UGG- -5'
29590 5' -54.2 NC_006151.1 + 16994 0.67 0.923403
Target:  5'- cGGuuGuGGAcccGCGCgaacaugGCGCGGgugGCCg -3'
miRNA:   3'- -CCggCuCCU---CGUGaaa----CGCGUCa--UGG- -5'
29590 5' -54.2 NC_006151.1 + 17112 0.67 0.923403
Target:  5'- cGCCG-GGGGCuccg-GCGgCGGUGCUg -3'
miRNA:   3'- cCGGCuCCUCGugaaaCGC-GUCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 46555 0.67 0.923403
Target:  5'- aGGCCGGcGcccaGGCGCUccccGCGCAGgGCCc -3'
miRNA:   3'- -CCGGCUcC----UCGUGAaa--CGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 72728 0.67 0.923403
Target:  5'- cGGCCccGAGGGGCGucc-GCaGCAGcGCCg -3'
miRNA:   3'- -CCGG--CUCCUCGUgaaaCG-CGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 82228 0.67 0.923403
Target:  5'- cGGCaggaAGGAGCGCagcgcgacGCGCAG-GCCg -3'
miRNA:   3'- -CCGgc--UCCUCGUGaaa-----CGCGUCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.