miRNA display CGI


Results 1 - 20 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 5' -54.2 NC_006151.1 + 27038 0.84 0.178905
Target:  5'- gGGCCGAGGGGCGCUg-GCGCGuGUaGCCc -3'
miRNA:   3'- -CCGGCUCCUCGUGAaaCGCGU-CA-UGG- -5'
29590 5' -54.2 NC_006151.1 + 58652 0.8 0.27272
Target:  5'- cGCCGGGaGGGCGCg--GCGCAGgGCCg -3'
miRNA:   3'- cCGGCUC-CUCGUGaaaCGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 133609 0.8 0.299871
Target:  5'- aGGCCGAGGGGCGuCUggggGuCGCGGcgGCCg -3'
miRNA:   3'- -CCGGCUCCUCGU-GAaa--C-GCGUCa-UGG- -5'
29590 5' -54.2 NC_006151.1 + 129121 0.79 0.321573
Target:  5'- gGGCCGAGGcGCGCUggGCGCcaaagAGcGCCg -3'
miRNA:   3'- -CCGGCUCCuCGUGAaaCGCG-----UCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 102094 0.79 0.329064
Target:  5'- aGCuCGAGGAGCACguggucgcgUGCGCGG-GCCg -3'
miRNA:   3'- cCG-GCUCCUCGUGaa-------ACGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 21495 0.78 0.385056
Target:  5'- cGGCCGGGGGGCGCgg-GCGUc--ACCg -3'
miRNA:   3'- -CCGGCUCCUCGUGaaaCGCGucaUGG- -5'
29590 5' -54.2 NC_006151.1 + 120793 0.78 0.393553
Target:  5'- cGGCCGAcgcGGAGCGCgccGCGCgcgaGGUGCUg -3'
miRNA:   3'- -CCGGCU---CCUCGUGaaaCGCG----UCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 64630 0.76 0.446999
Target:  5'- cGGCCGcGGGGCGCggcgccccGCGCAGgaACCg -3'
miRNA:   3'- -CCGGCuCCUCGUGaaa-----CGCGUCa-UGG- -5'
29590 5' -54.2 NC_006151.1 + 59851 0.76 0.446999
Target:  5'- cGGuCCGGGGGGCGCagcUGCcGCAGcACCg -3'
miRNA:   3'- -CC-GGCUCCUCGUGaa-ACG-CGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 10666 0.76 0.465693
Target:  5'- cGGCgGGGGAGCGCggaGCGCGccGCCc -3'
miRNA:   3'- -CCGgCUCCUCGUGaaaCGCGUcaUGG- -5'
29590 5' -54.2 NC_006151.1 + 19122 0.76 0.484785
Target:  5'- -aCCGcGGGGGCGCgcgcGCGUAGUACCa -3'
miRNA:   3'- ccGGC-UCCUCGUGaaa-CGCGUCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 56297 0.76 0.484785
Target:  5'- cGGCgGAGGcGgACgccGCGCGGUGCCu -3'
miRNA:   3'- -CCGgCUCCuCgUGaaaCGCGUCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 55023 0.76 0.494471
Target:  5'- cGCCGAGGGGCACccgGC-CGGcGCCg -3'
miRNA:   3'- cCGGCUCCUCGUGaaaCGcGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 113214 0.76 0.494471
Target:  5'- cGCCGAGGAGCGCcggcaccGCGCcguggacgAGUACUg -3'
miRNA:   3'- cCGGCUCCUCGUGaaa----CGCG--------UCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 141741 0.75 0.534037
Target:  5'- gGGCgGAGGGGCGCgggGCGCGc-GCCc -3'
miRNA:   3'- -CCGgCUCCUCGUGaaaCGCGUcaUGG- -5'
29590 5' -54.2 NC_006151.1 + 130947 0.75 0.544109
Target:  5'- cGGCgGGGGGucGCGCgg-GCGCGGggGCCg -3'
miRNA:   3'- -CCGgCUCCU--CGUGaaaCGCGUCa-UGG- -5'
29590 5' -54.2 NC_006151.1 + 4219 0.75 0.544109
Target:  5'- cGGCCGGGGcGCggGCgg-GCGCGGgcaGCCg -3'
miRNA:   3'- -CCGGCUCCuCG--UGaaaCGCGUCa--UGG- -5'
29590 5' -54.2 NC_006151.1 + 85256 0.74 0.554243
Target:  5'- uGGCCGAGG-GCGg---GCGCAucucGUACCg -3'
miRNA:   3'- -CCGGCUCCuCGUgaaaCGCGU----CAUGG- -5'
29590 5' -54.2 NC_006151.1 + 114831 0.74 0.574668
Target:  5'- uGuuGAGGGGCACgccgUGCGCG--ACCa -3'
miRNA:   3'- cCggCUCCUCGUGaa--ACGCGUcaUGG- -5'
29590 5' -54.2 NC_006151.1 + 90319 0.74 0.574668
Target:  5'- cGGUccaCGAGGGGCAUgggcagGCGCAGcaugGCCa -3'
miRNA:   3'- -CCG---GCUCCUCGUGaaa---CGCGUCa---UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.