miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 5' -54.2 NC_006151.1 + 1804 0.66 0.948101
Target:  5'- gGGCCGGGGAgGCAg---GCGCcggggaggcaAGcGCCg -3'
miRNA:   3'- -CCGGCUCCU-CGUgaaaCGCG----------UCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 2009 0.66 0.955122
Target:  5'- gGGCCGAGGGGgcgcccCGCUcaGCGgAGcagcagguagggguUGCCg -3'
miRNA:   3'- -CCGGCUCCUC------GUGAaaCGCgUC--------------AUGG- -5'
29590 5' -54.2 NC_006151.1 + 2280 0.7 0.805211
Target:  5'- cGGCCGGcGGGGCGCccgcggcgGCGaCGGcGCCc -3'
miRNA:   3'- -CCGGCU-CCUCGUGaaa-----CGC-GUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 2449 0.73 0.643983
Target:  5'- gGGCCGcagcGGGGCGCcgagcccccagcggUUggccGCGCGGUGCCc -3'
miRNA:   3'- -CCGGCu---CCUCGUG--------------AAa---CGCGUCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 3131 0.68 0.885717
Target:  5'- aGGCCGGgcgcGGGGCgcccucggcggGCUcgGCGCAGaGCUc -3'
miRNA:   3'- -CCGGCU----CCUCG-----------UGAaaCGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 3746 0.66 0.938954
Target:  5'- cGGCgGGGGAGCug---GCGUA--GCCg -3'
miRNA:   3'- -CCGgCUCCUCGugaaaCGCGUcaUGG- -5'
29590 5' -54.2 NC_006151.1 + 4162 0.66 0.952314
Target:  5'- cGUCGcGGAGCGCgagcaGCGCGGccgucACCu -3'
miRNA:   3'- cCGGCuCCUCGUGaaa--CGCGUCa----UGG- -5'
29590 5' -54.2 NC_006151.1 + 4219 0.75 0.544109
Target:  5'- cGGCCGGGGcGCggGCgg-GCGCGGgcaGCCg -3'
miRNA:   3'- -CCGGCUCCuCG--UGaaaCGCGUCa--UGG- -5'
29590 5' -54.2 NC_006151.1 + 4608 0.69 0.863719
Target:  5'- uGGCCGuGGGGCGCguggacccgGCGCug-GCa -3'
miRNA:   3'- -CCGGCuCCUCGUGaaa------CGCGucaUGg -5'
29590 5' -54.2 NC_006151.1 + 4966 0.71 0.742799
Target:  5'- cGGCCaugagcgaGAGGugguuguuguggagcGGCGCUUccUGCGCGGggGCCg -3'
miRNA:   3'- -CCGG--------CUCC---------------UCGUGAA--ACGCGUCa-UGG- -5'
29590 5' -54.2 NC_006151.1 + 5073 0.69 0.863719
Target:  5'- aGGCCGAGGGcCGCgggGCcGCGGcgggcGCCg -3'
miRNA:   3'- -CCGGCUCCUcGUGaaaCG-CGUCa----UGG- -5'
29590 5' -54.2 NC_006151.1 + 5232 0.66 0.956291
Target:  5'- aGGCCGAGcgccGCGCggcgGCgGCGGggGCCc -3'
miRNA:   3'- -CCGGCUCcu--CGUGaaa-CG-CGUCa-UGG- -5'
29590 5' -54.2 NC_006151.1 + 5342 0.72 0.678114
Target:  5'- cGGCgGAGG-GCGCccucuccgGCGCGGcGCCg -3'
miRNA:   3'- -CCGgCUCCuCGUGaaa-----CGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 6221 0.66 0.943649
Target:  5'- cGCCgGAGGAGcCGCg--GCGCcgGGaGCCc -3'
miRNA:   3'- cCGG-CUCCUC-GUGaaaCGCG--UCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 10666 0.76 0.465693
Target:  5'- cGGCgGGGGAGCGCggaGCGCGccGCCc -3'
miRNA:   3'- -CCGgCUCCUCGUGaaaCGCGUcaUGG- -5'
29590 5' -54.2 NC_006151.1 + 10888 0.67 0.922846
Target:  5'- uGCCGgagaaaaGGGGGUGCcg-GCGCGG-ACCg -3'
miRNA:   3'- cCGGC-------UCCUCGUGaaaCGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 11044 0.66 0.948101
Target:  5'- cGGCCGGGGgcccGGC-CUggaCGCGG-GCCa -3'
miRNA:   3'- -CCGGCUCC----UCGuGAaacGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 11695 0.68 0.878609
Target:  5'- gGGCCGcGGGAcgGCGCgugcgGCGCGGaACg -3'
miRNA:   3'- -CCGGC-UCCU--CGUGaaa--CGCGUCaUGg -5'
29590 5' -54.2 NC_006151.1 + 16994 0.67 0.923403
Target:  5'- cGGuuGuGGAcccGCGCgaacaugGCGCGGgugGCCg -3'
miRNA:   3'- -CCggCuCCU---CGUGaaa----CGCGUCa--UGG- -5'
29590 5' -54.2 NC_006151.1 + 17112 0.67 0.923403
Target:  5'- cGCCG-GGGGCuccg-GCGgCGGUGCUg -3'
miRNA:   3'- cCGGCuCCUCGugaaaCGC-GUCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.