Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29598 | 3' | -59.3 | NC_006151.1 | + | 3679 | 0.68 | 0.689326 |
Target: 5'- cCGGGGCGgcggGCCcCGGGCGcGcggCGCu -3' miRNA: 3'- -GCCCCGCaag-CGGaGCUCGCaCa--GCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 8326 | 0.67 | 0.741297 |
Target: 5'- cCGGGGCGcgCggGCCUCGAucgcgcccgccggacGCGgaggCGCg -3' miRNA: 3'- -GCCCCGCaaG--CGGAGCU---------------CGCaca-GCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 8492 | 0.68 | 0.689326 |
Target: 5'- aCGGGGCGggCGgg--GAGgGUGUCGUc -3' miRNA: 3'- -GCCCCGCaaGCggagCUCgCACAGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 8743 | 0.7 | 0.561149 |
Target: 5'- aGGGGgGU--GCC-CGGGCGUGucUCGCc -3' miRNA: 3'- gCCCCgCAagCGGaGCUCGCAC--AGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 11753 | 0.67 | 0.72802 |
Target: 5'- gGGGuGCGggCGag-UGAGCGUG-CGCg -3' miRNA: 3'- gCCC-CGCaaGCggaGCUCGCACaGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 19293 | 0.69 | 0.610292 |
Target: 5'- cCGGGGCcagCGgCgCGGGCGgccgGUCGCc -3' miRNA: 3'- -GCCCCGcaaGCgGaGCUCGCa---CAGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 20135 | 0.74 | 0.373585 |
Target: 5'- gGGGGCGggCGCCgcgggggCGGcGCGUGgacCGCc -3' miRNA: 3'- gCCCCGCaaGCGGa------GCU-CGCACa--GCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 20768 | 0.69 | 0.640012 |
Target: 5'- gCGGcGGaCGcgCGCCgggCGAGCGgcUCGCg -3' miRNA: 3'- -GCC-CC-GCaaGCGGa--GCUCGCacAGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 21409 | 0.77 | 0.238829 |
Target: 5'- aGGGGCGgugcggCGUCUCGGGCcucggggGUCGCg -3' miRNA: 3'- gCCCCGCaa----GCGGAGCUCGca-----CAGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 24477 | 0.67 | 0.756254 |
Target: 5'- gGGGGCGUUgGUCUCGA-UG-GUCccgGCg -3' miRNA: 3'- gCCCCGCAAgCGGAGCUcGCaCAG---CG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 26330 | 0.69 | 0.640012 |
Target: 5'- gCGGGGCGaggccCGCCUCacgGGGCGgcggcggGcCGCg -3' miRNA: 3'- -GCCCCGCaa---GCGGAG---CUCGCa------CaGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 26370 | 0.66 | 0.792423 |
Target: 5'- uCGGGGCGcgCGUCccccggCGGGCGg--CGUc -3' miRNA: 3'- -GCCCCGCaaGCGGa-----GCUCGCacaGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 27083 | 0.69 | 0.590543 |
Target: 5'- aGaGGGCGcggCGCagggCGcGCGUGUCGCc -3' miRNA: 3'- gC-CCCGCaa-GCGga--GCuCGCACAGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 27350 | 0.68 | 0.689326 |
Target: 5'- cCGGGGuCGUggGCCggggccCGGGCGgGUCGa -3' miRNA: 3'- -GCCCC-GCAagCGGa-----GCUCGCaCAGCg -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 27464 | 0.69 | 0.590543 |
Target: 5'- gGGGGCGggCGg-UCGAGCGggggGUCGg -3' miRNA: 3'- gCCCCGCaaGCggAGCUCGCa---CAGCg -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 28095 | 0.68 | 0.669678 |
Target: 5'- -cGGGCGU---CCUCGAGCGgggCGCg -3' miRNA: 3'- gcCCCGCAagcGGAGCUCGCacaGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 41515 | 0.69 | 0.610292 |
Target: 5'- uGGGGCGggCGCCgcgGAGCGgaa-GCc -3' miRNA: 3'- gCCCCGCaaGCGGag-CUCGCacagCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 44826 | 0.67 | 0.756254 |
Target: 5'- gCGaGGGCG-UCGggaCCggggCGAGCGggGUCGUg -3' miRNA: 3'- -GC-CCCGCaAGC---GGa---GCUCGCa-CAGCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 45347 | 0.69 | 0.640012 |
Target: 5'- aCGGGaGCGUgugGCC-CGAGUGUGagCGUg -3' miRNA: 3'- -GCCC-CGCAag-CGGaGCUCGCACa-GCG- -5' |
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29598 | 3' | -59.3 | NC_006151.1 | + | 45630 | 0.67 | 0.756254 |
Target: 5'- gGGGGCGUggaCGCCcCGGGCGa----- -3' miRNA: 3'- gCCCCGCAa--GCGGaGCUCGCacagcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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