miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 3' -59.3 NC_006151.1 + 56939 0.8 0.149399
Target:  5'- gCGGGGCGUcgccggcgcucagCGCCUCGAGCGcgcgGUUGUa -3'
miRNA:   3'- -GCCCCGCAa------------GCGGAGCUCGCa---CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 21409 0.77 0.238829
Target:  5'- aGGGGCGgugcggCGUCUCGGGCcucggggGUCGCg -3'
miRNA:   3'- gCCCCGCaa----GCGGAGCUCGca-----CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 126133 0.75 0.326134
Target:  5'- uCGGGGCGcUCGCCaUCGGGCugcuggugcuggccGgccugGUCGCg -3'
miRNA:   3'- -GCCCCGCaAGCGG-AGCUCG--------------Ca----CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 89142 0.74 0.348909
Target:  5'- gGGGGCGUcgagaccgcgccCGCCUCGGGCGaGgcgggCGCg -3'
miRNA:   3'- gCCCCGCAa-----------GCGGAGCUCGCaCa----GCG- -5'
29598 3' -59.3 NC_006151.1 + 135739 0.74 0.358025
Target:  5'- gGGGGCGgucuacgUCGUCUCGuacGCGUGggacggCGCc -3'
miRNA:   3'- gCCCCGCa------AGCGGAGCu--CGCACa-----GCG- -5'
29598 3' -59.3 NC_006151.1 + 20135 0.74 0.373585
Target:  5'- gGGGGCGggCGCCgcgggggCGGcGCGUGgacCGCc -3'
miRNA:   3'- gCCCCGCaaGCGGa------GCU-CGCACa--GCG- -5'
29598 3' -59.3 NC_006151.1 + 97385 0.73 0.389597
Target:  5'- gGGGGCGUcgGCCUCGucCGUGcCGUg -3'
miRNA:   3'- gCCCCGCAagCGGAGCucGCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 93573 0.73 0.39777
Target:  5'- gGGGGCGggcgCGCCaaaGAGCGggcUCGCg -3'
miRNA:   3'- gCCCCGCaa--GCGGag-CUCGCac-AGCG- -5'
29598 3' -59.3 NC_006151.1 + 141753 0.72 0.440237
Target:  5'- gCGGGGCGcgCGCCcCG-GUGgcGUCGCc -3'
miRNA:   3'- -GCCCCGCaaGCGGaGCuCGCa-CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 58422 0.72 0.449036
Target:  5'- -uGGGCGUgcggcagccaCGCCUCGguGGCGUG-CGCg -3'
miRNA:   3'- gcCCCGCAa---------GCGGAGC--UCGCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 89245 0.72 0.457932
Target:  5'- -uGGGCG-UCGUgUCGAGCGccGUCGUg -3'
miRNA:   3'- gcCCCGCaAGCGgAGCUCGCa-CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 131849 0.71 0.49256
Target:  5'- gCGGGGCGgccgagacgcgCGCCggCG-GCGUcggGUCGCa -3'
miRNA:   3'- -GCCCCGCaa---------GCGGa-GCuCGCA---CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 112352 0.71 0.494416
Target:  5'- gGGGGCagguaGUUgGCCUCGAGaaaGUccacgucgaaGUCGCg -3'
miRNA:   3'- gCCCCG-----CAAgCGGAGCUCg--CA----------CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 81672 0.71 0.503746
Target:  5'- aCGGagcGGCGguaCGCCUCG-GCGacgGUCGCc -3'
miRNA:   3'- -GCC---CCGCaa-GCGGAGCuCGCa--CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 57520 0.7 0.532169
Target:  5'- gCGGcGGCGgcCGCCUCcGGCGcgGcCGCg -3'
miRNA:   3'- -GCC-CCGCaaGCGGAGcUCGCa-CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 98340 0.7 0.561149
Target:  5'- gCGGGccGCGagaCGCCcgCGGGCGUG-CGCg -3'
miRNA:   3'- -GCCC--CGCaa-GCGGa-GCUCGCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 111047 0.7 0.561149
Target:  5'- -cGGGCaGggCGcCCUCGAGCGUcugCGCg -3'
miRNA:   3'- gcCCCG-CaaGC-GGAGCUCGCAca-GCG- -5'
29598 3' -59.3 NC_006151.1 + 8743 0.7 0.561149
Target:  5'- aGGGGgGU--GCC-CGGGCGUGucUCGCc -3'
miRNA:   3'- gCCCCgCAagCGGaGCUCGCAC--AGCG- -5'
29598 3' -59.3 NC_006151.1 + 88307 0.7 0.567976
Target:  5'- gGGGGCGcaggGCCUCGgagaAGCGcugcgaggccacgcUGUCGCg -3'
miRNA:   3'- gCCCCGCaag-CGGAGC----UCGC--------------ACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 71948 0.7 0.570908
Target:  5'- gCGaGcGCGUggcCGCCUCG-GCGuUGUCGCg -3'
miRNA:   3'- -GCcC-CGCAa--GCGGAGCuCGC-ACAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.