miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 3' -59.3 NC_006151.1 + 3679 0.68 0.689326
Target:  5'- cCGGGGCGgcggGCCcCGGGCGcGcggCGCu -3'
miRNA:   3'- -GCCCCGCaag-CGGaGCUCGCaCa--GCG- -5'
29598 3' -59.3 NC_006151.1 + 8326 0.67 0.741297
Target:  5'- cCGGGGCGcgCggGCCUCGAucgcgcccgccggacGCGgaggCGCg -3'
miRNA:   3'- -GCCCCGCaaG--CGGAGCU---------------CGCaca-GCG- -5'
29598 3' -59.3 NC_006151.1 + 8492 0.68 0.689326
Target:  5'- aCGGGGCGggCGgg--GAGgGUGUCGUc -3'
miRNA:   3'- -GCCCCGCaaGCggagCUCgCACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 8743 0.7 0.561149
Target:  5'- aGGGGgGU--GCC-CGGGCGUGucUCGCc -3'
miRNA:   3'- gCCCCgCAagCGGaGCUCGCAC--AGCG- -5'
29598 3' -59.3 NC_006151.1 + 11753 0.67 0.72802
Target:  5'- gGGGuGCGggCGag-UGAGCGUG-CGCg -3'
miRNA:   3'- gCCC-CGCaaGCggaGCUCGCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 19293 0.69 0.610292
Target:  5'- cCGGGGCcagCGgCgCGGGCGgccgGUCGCc -3'
miRNA:   3'- -GCCCCGcaaGCgGaGCUCGCa---CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 20135 0.74 0.373585
Target:  5'- gGGGGCGggCGCCgcgggggCGGcGCGUGgacCGCc -3'
miRNA:   3'- gCCCCGCaaGCGGa------GCU-CGCACa--GCG- -5'
29598 3' -59.3 NC_006151.1 + 20768 0.69 0.640012
Target:  5'- gCGGcGGaCGcgCGCCgggCGAGCGgcUCGCg -3'
miRNA:   3'- -GCC-CC-GCaaGCGGa--GCUCGCacAGCG- -5'
29598 3' -59.3 NC_006151.1 + 21409 0.77 0.238829
Target:  5'- aGGGGCGgugcggCGUCUCGGGCcucggggGUCGCg -3'
miRNA:   3'- gCCCCGCaa----GCGGAGCUCGca-----CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 24477 0.67 0.756254
Target:  5'- gGGGGCGUUgGUCUCGA-UG-GUCccgGCg -3'
miRNA:   3'- gCCCCGCAAgCGGAGCUcGCaCAG---CG- -5'
29598 3' -59.3 NC_006151.1 + 26330 0.69 0.640012
Target:  5'- gCGGGGCGaggccCGCCUCacgGGGCGgcggcggGcCGCg -3'
miRNA:   3'- -GCCCCGCaa---GCGGAG---CUCGCa------CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 26370 0.66 0.792423
Target:  5'- uCGGGGCGcgCGUCccccggCGGGCGg--CGUc -3'
miRNA:   3'- -GCCCCGCaaGCGGa-----GCUCGCacaGCG- -5'
29598 3' -59.3 NC_006151.1 + 27083 0.69 0.590543
Target:  5'- aGaGGGCGcggCGCagggCGcGCGUGUCGCc -3'
miRNA:   3'- gC-CCCGCaa-GCGga--GCuCGCACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 27350 0.68 0.689326
Target:  5'- cCGGGGuCGUggGCCggggccCGGGCGgGUCGa -3'
miRNA:   3'- -GCCCC-GCAagCGGa-----GCUCGCaCAGCg -5'
29598 3' -59.3 NC_006151.1 + 27464 0.69 0.590543
Target:  5'- gGGGGCGggCGg-UCGAGCGggggGUCGg -3'
miRNA:   3'- gCCCCGCaaGCggAGCUCGCa---CAGCg -5'
29598 3' -59.3 NC_006151.1 + 28095 0.68 0.669678
Target:  5'- -cGGGCGU---CCUCGAGCGgggCGCg -3'
miRNA:   3'- gcCCCGCAagcGGAGCUCGCacaGCG- -5'
29598 3' -59.3 NC_006151.1 + 41515 0.69 0.610292
Target:  5'- uGGGGCGggCGCCgcgGAGCGgaa-GCc -3'
miRNA:   3'- gCCCCGCaaGCGGag-CUCGCacagCG- -5'
29598 3' -59.3 NC_006151.1 + 44826 0.67 0.756254
Target:  5'- gCGaGGGCG-UCGggaCCggggCGAGCGggGUCGUg -3'
miRNA:   3'- -GC-CCCGCaAGC---GGa---GCUCGCa-CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 45347 0.69 0.640012
Target:  5'- aCGGGaGCGUgugGCC-CGAGUGUGagCGUg -3'
miRNA:   3'- -GCCC-CGCAag-CGGaGCUCGCACa-GCG- -5'
29598 3' -59.3 NC_006151.1 + 45630 0.67 0.756254
Target:  5'- gGGGGCGUggaCGCCcCGGGCGa----- -3'
miRNA:   3'- gCCCCGCAa--GCGGaGCUCGCacagcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.