miRNA display CGI


Results 21 - 40 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 3' -59.3 NC_006151.1 + 46851 0.69 0.609302
Target:  5'- cCGGGGCGg--GCCUCcGGCGUcuagcucGUCGg -3'
miRNA:   3'- -GCCCCGCaagCGGAGcUCGCA-------CAGCg -5'
29598 3' -59.3 NC_006151.1 + 48591 0.67 0.756254
Target:  5'- cCGGGGUG--CGCCUCGucguGCcUGcCGCc -3'
miRNA:   3'- -GCCCCGCaaGCGGAGCu---CGcACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 51398 0.7 0.570908
Target:  5'- cCGGGGCGagCGCgUCGcAGCGcGU-GCa -3'
miRNA:   3'- -GCCCCGCaaGCGgAGC-UCGCaCAgCG- -5'
29598 3' -59.3 NC_006151.1 + 53343 0.69 0.640012
Target:  5'- aCGGGGCGcgcgcgCGCCgCGuacuGCGUcguGUCGUa -3'
miRNA:   3'- -GCCCCGCaa----GCGGaGCu---CGCA---CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 53970 0.68 0.649916
Target:  5'- gCGGcGGCGg-CGCCUCc-GCGggcGUCGCg -3'
miRNA:   3'- -GCC-CCGCaaGCGGAGcuCGCa--CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 55472 0.66 0.774577
Target:  5'- gGGGGCGcgCGCC-CG-GCGc--CGCg -3'
miRNA:   3'- gCCCCGCaaGCGGaGCuCGCacaGCG- -5'
29598 3' -59.3 NC_006151.1 + 56939 0.8 0.149399
Target:  5'- gCGGGGCGUcgccggcgcucagCGCCUCGAGCGcgcgGUUGUa -3'
miRNA:   3'- -GCCCCGCAa------------GCGGAGCUCGCa---CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 57520 0.7 0.532169
Target:  5'- gCGGcGGCGgcCGCCUCcGGCGcgGcCGCg -3'
miRNA:   3'- -GCC-CCGCaaGCGGAGcUCGCa-CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 58422 0.72 0.449036
Target:  5'- -uGGGCGUgcggcagccaCGCCUCGguGGCGUG-CGCg -3'
miRNA:   3'- gcCCCGCAa---------GCGGAGC--UCGCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 61287 0.68 0.669678
Target:  5'- gCGGGGaCGgaaGCUcgaCGGGCGcGUCGCg -3'
miRNA:   3'- -GCCCC-GCaagCGGa--GCUCGCaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 61980 0.68 0.699087
Target:  5'- uGGGGCGUgccaCGCCUgcaagggcaCGGGUgacGUG-CGCg -3'
miRNA:   3'- gCCCCGCAa---GCGGA---------GCUCG---CACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 63758 0.67 0.746934
Target:  5'- gCGGGGCGU---CCUCG-GCGcccccgcGUCGCc -3'
miRNA:   3'- -GCCCCGCAagcGGAGCuCGCa------CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 64212 0.67 0.746934
Target:  5'- aGGuccGGCGUgggCGCCUCG-GCGUacaggGcCGCg -3'
miRNA:   3'- gCC---CCGCAa--GCGGAGCuCGCA-----CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 65393 0.66 0.765471
Target:  5'- -cGGGCG--CGCCgugagCGAGCGgcgGUaCGCg -3'
miRNA:   3'- gcCCCGCaaGCGGa----GCUCGCa--CA-GCG- -5'
29598 3' -59.3 NC_006151.1 + 68077 0.69 0.630101
Target:  5'- aGGucGGCGggcagCGCCUCGAGgcuCGcGUCGCc -3'
miRNA:   3'- gCC--CCGCaa---GCGGAGCUC---GCaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 68877 0.66 0.765471
Target:  5'- cCGGGGCG--CGCCcggccacgUCGAggacggccucGCG-GUCGCg -3'
miRNA:   3'- -GCCCCGCaaGCGG--------AGCU----------CGCaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 69327 0.69 0.630101
Target:  5'- gCGcGGGCGcgUCGCCgcccgCGAGCGcGgCGUa -3'
miRNA:   3'- -GC-CCCGCa-AGCGGa----GCUCGCaCaGCG- -5'
29598 3' -59.3 NC_006151.1 + 71681 0.7 0.570908
Target:  5'- aCGGGcCGcgUGCC--GAGCGUGUCGCc -3'
miRNA:   3'- -GCCCcGCaaGCGGagCUCGCACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 71948 0.7 0.570908
Target:  5'- gCGaGcGCGUggcCGCCUCG-GCGuUGUCGCg -3'
miRNA:   3'- -GCcC-CGCAa--GCGGAGCuCGC-ACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 72736 0.67 0.756254
Target:  5'- aGGGGCGUcCGCa--GcAGCGccgaGUCGCu -3'
miRNA:   3'- gCCCCGCAaGCGgagC-UCGCa---CAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.