miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 5' -55.4 NC_006151.1 + 126158 0.73 0.546062
Target:  5'- gGUGCUGgccgGCcuGGUcGCGGCCuUCCUGGCc -3'
miRNA:   3'- -UACGAUa---UG--CCAaCGCUGG-AGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 5378 0.72 0.586907
Target:  5'- -gGCUGUcucuGCGGggGCGccccGCCgucCCCGGCg -3'
miRNA:   3'- uaCGAUA----UGCCaaCGC----UGGa--GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 40404 0.72 0.628285
Target:  5'- cUGCguccGCGGcgGCGGCCUcgguccccucggCCCGGCg -3'
miRNA:   3'- uACGaua-UGCCaaCGCUGGA------------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 13112 0.71 0.635546
Target:  5'- -cGCg--GCGGgucacgcgcgcucccGCGACUUCCCGGCc -3'
miRNA:   3'- uaCGauaUGCCaa-------------CGCUGGAGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 57516 0.71 0.649024
Target:  5'- -cGCg--GCGGcgGCGGCCgccUCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGCUGGa--GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 112012 0.71 0.659376
Target:  5'- -cGCg--GCGGcgGCGAuUUUCCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGCU-GGAGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 115052 0.71 0.668675
Target:  5'- uUGCUGUACgcguccgGGggGCGGCUgagCUCGGCc -3'
miRNA:   3'- uACGAUAUG-------CCaaCGCUGGa--GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 135132 0.71 0.669707
Target:  5'- -gGCUGgGCGGggacggGCaGACCcagCCCGGCg -3'
miRNA:   3'- uaCGAUaUGCCaa----CG-CUGGa--GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 5340 0.7 0.720705
Target:  5'- -cGCg--GCGGaggGCGcCCUCuCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaa-CGCuGGAG-GGCCG- -5'
29598 5' -55.4 NC_006151.1 + 21441 0.7 0.720705
Target:  5'- -cGCg--GCGuGggGUGGCC-CCCGGCg -3'
miRNA:   3'- uaCGauaUGC-CaaCGCUGGaGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 107087 0.7 0.730708
Target:  5'- -aGCUG-GCGGUgucgcGCGugCUCUgGGCg -3'
miRNA:   3'- uaCGAUaUGCCAa----CGCugGAGGgCCG- -5'
29598 5' -55.4 NC_006151.1 + 124133 0.7 0.730708
Target:  5'- -gGCUccACGGUggUGCGGCUggagCCCGaGCa -3'
miRNA:   3'- uaCGAuaUGCCA--ACGCUGGa---GGGC-CG- -5'
29598 5' -55.4 NC_006151.1 + 65813 0.7 0.738648
Target:  5'- cGUGCc--GCGGUggauggGCGGCCgcgccagcgcggCCCGGCu -3'
miRNA:   3'- -UACGauaUGCCAa-----CGCUGGa-----------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 57150 0.69 0.750442
Target:  5'- -cGCg--GCGGggGCGAgggcguCC-CCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGCU------GGaGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 82202 0.69 0.750442
Target:  5'- -cGCUcgGCGGagaUGaUGACCUCCagCGGCa -3'
miRNA:   3'- uaCGAuaUGCCa--AC-GCUGGAGG--GCCG- -5'
29598 5' -55.4 NC_006151.1 + 6102 0.69 0.777335
Target:  5'- cUGCUGggccgaaggaggACGGg-GCGGCCUCgUGGCu -3'
miRNA:   3'- uACGAUa-----------UGCCaaCGCUGGAGgGCCG- -5'
29598 5' -55.4 NC_006151.1 + 63319 0.69 0.779218
Target:  5'- -cGCgacGCGGUgacGCGaaagGCCUCCuCGGCg -3'
miRNA:   3'- uaCGauaUGCCAa--CGC----UGGAGG-GCCG- -5'
29598 5' -55.4 NC_006151.1 + 5909 0.69 0.779218
Target:  5'- aGUGCUGccGgGGUcgGCGGCCggggCCCGGa -3'
miRNA:   3'- -UACGAUa-UgCCAa-CGCUGGa---GGGCCg -5'
29598 5' -55.4 NC_006151.1 + 128065 0.69 0.792246
Target:  5'- -gGCUGcGCGGggGCGACCgacaggaagcgcaugUCCCgcuGGCc -3'
miRNA:   3'- uaCGAUaUGCCaaCGCUGG---------------AGGG---CCG- -5'
29598 5' -55.4 NC_006151.1 + 24231 0.68 0.797742
Target:  5'- cUGCgUGUACGGcugGCGGugggUCCCGGCg -3'
miRNA:   3'- uACG-AUAUGCCaa-CGCUgg--AGGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.