miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 5' -55.4 NC_006151.1 + 4796 0.66 0.886885
Target:  5'- -cGCggcGCGGUaGCgGGCCgcggCCUGGCg -3'
miRNA:   3'- uaCGauaUGCCAaCG-CUGGa---GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 5340 0.7 0.720705
Target:  5'- -cGCg--GCGGaggGCGcCCUCuCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaa-CGCuGGAG-GGCCG- -5'
29598 5' -55.4 NC_006151.1 + 5378 0.72 0.586907
Target:  5'- -gGCUGUcucuGCGGggGCGccccGCCgucCCCGGCg -3'
miRNA:   3'- uaCGAUA----UGCCaaCGC----UGGa--GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 5583 0.66 0.918674
Target:  5'- gGUGCUGgugAUGGUgaCGACCgcgguccccUCCGGCg -3'
miRNA:   3'- -UACGAUa--UGCCAacGCUGGa--------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 5909 0.69 0.779218
Target:  5'- aGUGCUGccGgGGUcgGCGGCCggggCCCGGa -3'
miRNA:   3'- -UACGAUa-UgCCAa-CGCUGGa---GGGCCg -5'
29598 5' -55.4 NC_006151.1 + 6102 0.69 0.777335
Target:  5'- cUGCUGggccgaaggaggACGGg-GCGGCCUCgUGGCu -3'
miRNA:   3'- uACGAUa-----------UGCCaaCGCUGGAGgGCCG- -5'
29598 5' -55.4 NC_006151.1 + 13018 0.66 0.918674
Target:  5'- cUGUcccuCGGggcGCGGCCgaCCCGGCg -3'
miRNA:   3'- uACGauauGCCaa-CGCUGGa-GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 13112 0.71 0.635546
Target:  5'- -cGCg--GCGGgucacgcgcgcucccGCGACUUCCCGGCc -3'
miRNA:   3'- uaCGauaUGCCaa-------------CGCUGGAGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 17131 0.66 0.918674
Target:  5'- gGUGCU--GCGGgagGCGGCCaggagcaCCUGGUc -3'
miRNA:   3'- -UACGAuaUGCCaa-CGCUGGa------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 21441 0.7 0.720705
Target:  5'- -cGCg--GCGuGggGUGGCC-CCCGGCg -3'
miRNA:   3'- uaCGauaUGC-CaaCGCUGGaGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 24231 0.68 0.797742
Target:  5'- cUGCgUGUACGGcugGCGGugggUCCCGGCg -3'
miRNA:   3'- uACG-AUAUGCCaa-CGCUgg--AGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 25216 0.68 0.824352
Target:  5'- -gGcCUcgGCGGagccGCGACCUCuuGGUg -3'
miRNA:   3'- uaC-GAuaUGCCaa--CGCUGGAGggCCG- -5'
29598 5' -55.4 NC_006151.1 + 36519 0.68 0.824352
Target:  5'- -gGCcg-GCGGc-GCGGCCUcggacCCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGCUGGA-----GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 38396 0.66 0.893046
Target:  5'- -gGCg--GCGGgcGCccccuccGGCCUCcCCGGCu -3'
miRNA:   3'- uaCGauaUGCCaaCG-------CUGGAG-GGCCG- -5'
29598 5' -55.4 NC_006151.1 + 39156 0.67 0.857286
Target:  5'- -cGCgccGCG---GCGGCCUCUCGGCg -3'
miRNA:   3'- uaCGauaUGCcaaCGCUGGAGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 40404 0.72 0.628285
Target:  5'- cUGCguccGCGGcgGCGGCCUcgguccccucggCCCGGCg -3'
miRNA:   3'- uACGaua-UGCCaaCGCUGGA------------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 40565 0.66 0.906679
Target:  5'- -aGCg--GCGGcgGCGGCCgcggcggagggCUCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGCUGGa----------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 52849 0.66 0.912798
Target:  5'- -aGCgucagGUGCGGcUGCugcguGGCCUCgCGGUa -3'
miRNA:   3'- uaCGa----UAUGCCaACG-----CUGGAGgGCCG- -5'
29598 5' -55.4 NC_006151.1 + 54112 0.68 0.833717
Target:  5'- -gGCUGcgACGGcgGCGGCUgcggacgggcucugcCCCGGCg -3'
miRNA:   3'- uaCGAUa-UGCCaaCGCUGGa--------------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 57150 0.69 0.750442
Target:  5'- -cGCg--GCGGggGCGAgggcguCC-CCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGCU------GGaGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.