miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 54456 0.74 0.741377
Target:  5'- cCGUGGcCGAGCGCCUcuUCGACAc- -3'
miRNA:   3'- cGCACCuGCUCGUGGAcuAGUUGUug -5'
29599 3' -51.2 NC_006151.1 + 54659 0.8 0.456372
Target:  5'- uGCGUGGACGAGCacgACCUGGccgggcaccugcgcgUCGccgGCAGCg -3'
miRNA:   3'- -CGCACCUGCUCG---UGGACU---------------AGU---UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 55256 0.69 0.951956
Target:  5'- ---aGGACGccuuccGCACCuccgUGGUCAACAGCa -3'
miRNA:   3'- cgcaCCUGCu-----CGUGG----ACUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 55935 0.69 0.951956
Target:  5'- cGUGaUGGACGAGCugACCUGG-CAcgcccucccGCGGCu -3'
miRNA:   3'- -CGC-ACCUGCUCG--UGGACUaGU---------UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 59398 0.71 0.890246
Target:  5'- aCGUGGcacCGcAGCACCUcGAgCAGCAGCg -3'
miRNA:   3'- cGCACCu--GC-UCGUGGA-CUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 60956 0.7 0.910137
Target:  5'- aGCGUGGACaug-ACCUcGUCGACGACg -3'
miRNA:   3'- -CGCACCUGcucgUGGAcUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 61186 0.66 0.990733
Target:  5'- -aGUGGcCGccAGCGCCgcgGAgagccauuUCAGCAGCg -3'
miRNA:   3'- cgCACCuGC--UCGUGGa--CU--------AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 63585 0.66 0.986998
Target:  5'- gGCGUGGcgcggguucgcgaacACGGGCACCc--UCAGCGcGCg -3'
miRNA:   3'- -CGCACC---------------UGCUCGUGGacuAGUUGU-UG- -5'
29599 3' -51.2 NC_006151.1 + 64218 0.66 0.986333
Target:  5'- gGCGUGGGCGccucggcguacAGgGCCg---CGACGGCg -3'
miRNA:   3'- -CGCACCUGC-----------UCgUGGacuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 64966 0.66 0.984557
Target:  5'- gGCGcaGGcCGAGCGCCacGUCcAGCAGCa -3'
miRNA:   3'- -CGCa-CCuGCUCGUGGacUAG-UUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 66620 0.67 0.972946
Target:  5'- aCGacGGCGAGCGCCUGGccuUCcaccGCAACg -3'
miRNA:   3'- cGCacCUGCUCGUGGACU---AGu---UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 68047 0.66 0.984557
Target:  5'- gGCGcGG-CGGGCACggGcUCGGCGACg -3'
miRNA:   3'- -CGCaCCuGCUCGUGgaCuAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 69926 0.68 0.963496
Target:  5'- -aGUGGGCgccGAGCGCCagGggCAGCGAg -3'
miRNA:   3'- cgCACCUG---CUCGUGGa-CuaGUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 73210 0.71 0.890246
Target:  5'- cGCG-GGccaggcccGCGGGCACCUGG--GGCAGCa -3'
miRNA:   3'- -CGCaCC--------UGCUCGUGGACUagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 75105 0.76 0.658164
Target:  5'- gGCGUugccGGGCGccAGCAgCUGGUCGGCGGCc -3'
miRNA:   3'- -CGCA----CCUGC--UCGUgGACUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 75430 0.7 0.912617
Target:  5'- gGCGUGGGCGcgaagcugccggcguGGCGCgCguagcGGUCGGCGGCc -3'
miRNA:   3'- -CGCACCUGC---------------UCGUG-Ga----CUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 76068 0.66 0.991921
Target:  5'- aGCGUGaa-GGGCGCCag--CAGCGACa -3'
miRNA:   3'- -CGCACcugCUCGUGGacuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 76113 0.67 0.982611
Target:  5'- ---aGGACGcgcAGCAUCUGGUCGGCcguGCc -3'
miRNA:   3'- cgcaCCUGC---UCGUGGACUAGUUGu--UG- -5'
29599 3' -51.2 NC_006151.1 + 78325 0.71 0.86816
Target:  5'- gGC-UGGACGAGCGCCccgGGgcgggcgcgggCGACGACg -3'
miRNA:   3'- -CGcACCUGCUCGUGGa--CUa----------GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 78677 0.66 0.988552
Target:  5'- gGUGcUGGACGGGCucuacgccggccgggGCCUcGUCGccGCGACg -3'
miRNA:   3'- -CGC-ACCUGCUCG---------------UGGAcUAGU--UGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.