miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 661 0.7 0.910137
Target:  5'- cGCGgccgGGGCGGGCuCCgcgGAUCGcauCGGCg -3'
miRNA:   3'- -CGCa---CCUGCUCGuGGa--CUAGUu--GUUG- -5'
29599 3' -51.2 NC_006151.1 + 2296 0.68 0.96687
Target:  5'- cGCGgcgGcGACG-GCGCCcggGGUCAGCAccaGCg -3'
miRNA:   3'- -CGCa--C-CUGCuCGUGGa--CUAGUUGU---UG- -5'
29599 3' -51.2 NC_006151.1 + 5854 0.67 0.982611
Target:  5'- uGCGgagggGGACGAGCGCCcgGGgccgcCGGgGGCc -3'
miRNA:   3'- -CGCa----CCUGCUCGUGGa-CUa----GUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 6150 0.66 0.990733
Target:  5'- cGCGaGGACG-GCGgCCUcGGccUCGGCGGCg -3'
miRNA:   3'- -CGCaCCUGCuCGU-GGA-CU--AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 17136 0.69 0.933095
Target:  5'- uGCGggagGcGGCcagGAGCACCUGGUCGcagaggucgGCGGCg -3'
miRNA:   3'- -CGCa---C-CUG---CUCGUGGACUAGU---------UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 19879 0.71 0.86816
Target:  5'- -gGUGGA-GAGCGCCagGGcCAGCAGCg -3'
miRNA:   3'- cgCACCUgCUCGUGGa-CUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 20102 0.67 0.975661
Target:  5'- gGCugggGGACGGGCGCCc---CGGCGACg -3'
miRNA:   3'- -CGca--CCUGCUCGUGGacuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 20158 0.67 0.980485
Target:  5'- cGCGUGGAccgcCGGGCcgcGCCcgGGUC-GCGGCc -3'
miRNA:   3'- -CGCACCU----GCUCG---UGGa-CUAGuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 20723 0.66 0.986333
Target:  5'- gGCG-GGGcCGGGCGCgaGAcgAACAGCa -3'
miRNA:   3'- -CGCaCCU-GCUCGUGgaCUagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 24769 0.66 0.991921
Target:  5'- ---cGGGCGAGCAUCUGuuUCAugcGCAugACg -3'
miRNA:   3'- cgcaCCUGCUCGUGGACu-AGU---UGU--UG- -5'
29599 3' -51.2 NC_006151.1 + 26329 0.67 0.982611
Target:  5'- cGCG-GGGCGAGgccCGCCUcacgGggCGGCGGCg -3'
miRNA:   3'- -CGCaCCUGCUC---GUGGA----CuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 27229 0.67 0.972946
Target:  5'- cCGUGGACGcGCACCUccucggGGUCgGGCGGg -3'
miRNA:   3'- cGCACCUGCuCGUGGA------CUAG-UUGUUg -5'
29599 3' -51.2 NC_006151.1 + 29213 0.7 0.927742
Target:  5'- gGCGggguggGGAUGGGuCACCgccgGGUCGGCcGCg -3'
miRNA:   3'- -CGCa-----CCUGCUC-GUGGa---CUAGUUGuUG- -5'
29599 3' -51.2 NC_006151.1 + 30836 0.67 0.978171
Target:  5'- uGCGUGGGCGgagaggAGCGaggaggaCUGG-CGGCGGCg -3'
miRNA:   3'- -CGCACCUGC------UCGUg------GACUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 33963 0.67 0.972946
Target:  5'- gGCG-GGACGcGGCGCCcGcgCGGgGACa -3'
miRNA:   3'- -CGCaCCUGC-UCGUGGaCuaGUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 48403 0.67 0.975399
Target:  5'- cUGUGGGCGucgGGCaccgccuACCUGGUCAACc-- -3'
miRNA:   3'- cGCACCUGC---UCG-------UGGACUAGUUGuug -5'
29599 3' -51.2 NC_006151.1 + 49904 0.66 0.989412
Target:  5'- cCGUGGACGAGC-UCgGGcgcCGGCGGCu -3'
miRNA:   3'- cGCACCUGCUCGuGGaCUa--GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 51392 0.66 0.986333
Target:  5'- cGCGgcccgGGGCGAGCGC---GUC-GCAGCg -3'
miRNA:   3'- -CGCa----CCUGCUCGUGgacUAGuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 53106 0.66 0.987949
Target:  5'- aGCG-GGAggccguacuCGAGCGCCU--UCAugAGCu -3'
miRNA:   3'- -CGCaCCU---------GCUCGUGGAcuAGUugUUG- -5'
29599 3' -51.2 NC_006151.1 + 53316 0.69 0.943033
Target:  5'- uGCGUGGGCGAGC-CCacacaGACGAg -3'
miRNA:   3'- -CGCACCUGCUCGuGGacuagUUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.