miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 54659 0.8 0.456372
Target:  5'- uGCGUGGACGAGCacgACCUGGccgggcaccugcgcgUCGccgGCAGCg -3'
miRNA:   3'- -CGCACCUGCUCG---UGGACU---------------AGU---UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 122145 0.79 0.491485
Target:  5'- cCGUGGACGAGUuCCUcgcgcgcacGAUCGGCGGCg -3'
miRNA:   3'- cGCACCUGCUCGuGGA---------CUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 105753 0.77 0.562971
Target:  5'- cGCGUGG-CGGcGCGCCUGggCGACcGCg -3'
miRNA:   3'- -CGCACCuGCU-CGUGGACuaGUUGuUG- -5'
29599 3' -51.2 NC_006151.1 + 106949 0.77 0.573442
Target:  5'- ---gGGGCGAGCGCCUGcuggcgcUCGACGACa -3'
miRNA:   3'- cgcaCCUGCUCGUGGACu------AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 75105 0.76 0.658164
Target:  5'- gGCGUugccGGGCGccAGCAgCUGGUCGGCGGCc -3'
miRNA:   3'- -CGCA----CCUGC--UCGUgGACUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 92750 0.75 0.668747
Target:  5'- gGCGcGGcACGGGCACCUGAgcgugCuGCGGCg -3'
miRNA:   3'- -CGCaCC-UGCUCGUGGACUa----GuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 89247 0.74 0.720985
Target:  5'- gGCGUcGuGuCGAGCGCCgucgUGGUCGACGGCg -3'
miRNA:   3'- -CGCA-C-CuGCUCGUGG----ACUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 123284 0.74 0.741377
Target:  5'- uCGUGGACGAGCGCgaGAcgggcugcuUCGACGcGCa -3'
miRNA:   3'- cGCACCUGCUCGUGgaCU---------AGUUGU-UG- -5'
29599 3' -51.2 NC_006151.1 + 54456 0.74 0.741377
Target:  5'- cCGUGGcCGAGCGCCUcuUCGACAc- -3'
miRNA:   3'- cGCACCuGCUCGUGGAcuAGUUGUug -5'
29599 3' -51.2 NC_006151.1 + 101195 0.74 0.761357
Target:  5'- cCGUGGACGcGUGCCUGcgCGAgGGCc -3'
miRNA:   3'- cGCACCUGCuCGUGGACuaGUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 85723 0.73 0.790377
Target:  5'- cGCGcGGACGAGCGCacgGAgcUCAcGCAGCu -3'
miRNA:   3'- -CGCaCCUGCUCGUGga-CU--AGU-UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 101671 0.73 0.818016
Target:  5'- gGCGUGGGCGAgacGUACCUcGUgGACGAg -3'
miRNA:   3'- -CGCACCUGCU---CGUGGAcUAgUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 136594 0.72 0.835548
Target:  5'- cGCGcGGcuccGCGAGCACCUGGacgccgUCAACGucACg -3'
miRNA:   3'- -CGCaCC----UGCUCGUGGACU------AGUUGU--UG- -5'
29599 3' -51.2 NC_006151.1 + 100361 0.72 0.852283
Target:  5'- uCGUGGACGccgugGGCGCCUuccgcgccgaGGUCAACAcGCa -3'
miRNA:   3'- cGCACCUGC-----UCGUGGA----------CUAGUUGU-UG- -5'
29599 3' -51.2 NC_006151.1 + 118216 0.72 0.860332
Target:  5'- cCGUGGugGCGGGCGCCcgGAccaccgggcUCGGCGGCg -3'
miRNA:   3'- cGCACC--UGCUCGUGGa-CU---------AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 19879 0.71 0.86816
Target:  5'- -gGUGGA-GAGCGCCagGGcCAGCAGCg -3'
miRNA:   3'- cgCACCUgCUCGUGGa-CUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 78325 0.71 0.86816
Target:  5'- gGC-UGGACGAGCGCCccgGGgcgggcgcgggCGACGACg -3'
miRNA:   3'- -CGcACCUGCUCGUGGa--CUa----------GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 112621 0.71 0.883122
Target:  5'- gGCGcUGGACGAGCccugccgcguguGCCgcacGAUCGACGu- -3'
miRNA:   3'- -CGC-ACCUGCUCG------------UGGa---CUAGUUGUug -5'
29599 3' -51.2 NC_006151.1 + 59398 0.71 0.890246
Target:  5'- aCGUGGcacCGcAGCACCUcGAgCAGCAGCg -3'
miRNA:   3'- cGCACCu--GC-UCGUGGA-CUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 73210 0.71 0.890246
Target:  5'- cGCG-GGccaggcccGCGGGCACCUGG--GGCAGCa -3'
miRNA:   3'- -CGCaCC--------UGCUCGUGGACUagUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.