miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 5' -53.7 NC_006151.1 + 94184 0.78 0.465512
Target:  5'- gUUGaCGUUGACGAGGUC--GUCCGCGg -3'
miRNA:   3'- -AGCaGCAGCUGCUCCAGuaCAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 75855 0.76 0.552757
Target:  5'- ---cCGUCGACGGGGcgccccugCGUGUCCGCGu -3'
miRNA:   3'- agcaGCAGCUGCUCCa-------GUACAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 133123 0.74 0.65448
Target:  5'- cCGUCGUCGG-GGGGuUCAUGUCC-Ca -3'
miRNA:   3'- aGCAGCAGCUgCUCC-AGUACAGGuGc -5'
29599 5' -53.7 NC_006151.1 + 37565 0.74 0.664684
Target:  5'- gCGgggcCGcCGGCGAGGcCAUGUCCugGc -3'
miRNA:   3'- aGCa---GCaGCUGCUCCaGUACAGGugC- -5'
29599 5' -53.7 NC_006151.1 + 135275 0.73 0.695102
Target:  5'- ---cUGcUCGACGAGGUCGuccgUGUCCGCGu -3'
miRNA:   3'- agcaGC-AGCUGCUCCAGU----ACAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 97557 0.73 0.715132
Target:  5'- cCGUCGUCGccgcCGAGGcgCAgcucgcgGUCCACGu -3'
miRNA:   3'- aGCAGCAGCu---GCUCCa-GUa------CAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 117065 0.72 0.744623
Target:  5'- gUCGUgGUCGagcagcaggcGCGuGGUCGcGUCCACGc -3'
miRNA:   3'- -AGCAgCAGC----------UGCuCCAGUaCAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 45093 0.72 0.763807
Target:  5'- gCGguguggCGUCGAUGGGGUCGUG-CCGUGg -3'
miRNA:   3'- aGCa-----GCAGCUGCUCCAGUACaGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 72857 0.71 0.800701
Target:  5'- gUUGcUCGUCGGCGAGGcggcggcgccCGUGUCgGCGa -3'
miRNA:   3'- -AGC-AGCAGCUGCUCCa---------GUACAGgUGC- -5'
29599 5' -53.7 NC_006151.1 + 78166 0.71 0.800701
Target:  5'- cCGcCGUgGuCGAGGcCGUGUCCGCc -3'
miRNA:   3'- aGCaGCAgCuGCUCCaGUACAGGUGc -5'
29599 5' -53.7 NC_006151.1 + 18114 0.71 0.804265
Target:  5'- cUCGUCGg-GACGGGGgcgcuggggucgaaCGUGUCCAUGu -3'
miRNA:   3'- -AGCAGCagCUGCUCCa-------------GUACAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 51854 0.71 0.826803
Target:  5'- cCGUaGUCGACGuAGGUggcCAUGUCCAg- -3'
miRNA:   3'- aGCAgCAGCUGC-UCCA---GUACAGGUgc -5'
29599 5' -53.7 NC_006151.1 + 85423 0.71 0.826803
Target:  5'- --uUCGUgGACGAGGUCAaccgcgCCGCGg -3'
miRNA:   3'- agcAGCAgCUGCUCCAGUaca---GGUGC- -5'
29599 5' -53.7 NC_006151.1 + 28053 0.7 0.83516
Target:  5'- aUCGUCGUCGuCGAGGcCgAUGcCgACGu -3'
miRNA:   3'- -AGCAGCAGCuGCUCCaG-UACaGgUGC- -5'
29599 5' -53.7 NC_006151.1 + 99364 0.7 0.83516
Target:  5'- -gGUCGUCGGCGGcGUCGUGcaCCGCc -3'
miRNA:   3'- agCAGCAGCUGCUcCAGUACa-GGUGc -5'
29599 5' -53.7 NC_006151.1 + 98195 0.7 0.843332
Target:  5'- aUCGUCG-CGccgcGCGGGGUCGaGUgCGCGg -3'
miRNA:   3'- -AGCAGCaGC----UGCUCCAGUaCAgGUGC- -5'
29599 5' -53.7 NC_006151.1 + 64542 0.7 0.843332
Target:  5'- gCGUCGggggCGGCGAGGcCGUGg-CGCGc -3'
miRNA:   3'- aGCAGCa---GCUGCUCCaGUACagGUGC- -5'
29599 5' -53.7 NC_006151.1 + 141670 0.7 0.851313
Target:  5'- --cUCGUUGugGAGG-CAUGUCUGCc -3'
miRNA:   3'- agcAGCAGCugCUCCaGUACAGGUGc -5'
29599 5' -53.7 NC_006151.1 + 116445 0.69 0.881189
Target:  5'- cUUGUCGgcggCGACGGcGUaCAUGUCCAgGg -3'
miRNA:   3'- -AGCAGCa---GCUGCUcCA-GUACAGGUgC- -5'
29599 5' -53.7 NC_006151.1 + 62603 0.69 0.888118
Target:  5'- aCGaCGgCGACGAGGUCGUGU--ACGa -3'
miRNA:   3'- aGCaGCaGCUGCUCCAGUACAggUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.