miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 5' -53.7 NC_006151.1 + 3606 0.69 0.894821
Target:  5'- uUCGUCGUCG-CGGuGGcCGUGgccguccCCGCGg -3'
miRNA:   3'- -AGCAGCAGCuGCU-CCaGUACa------GGUGC- -5'
29599 5' -53.7 NC_006151.1 + 4092 0.68 0.930132
Target:  5'- aCGgugCGggCGACGAGGgcgaCAgaGUCCGCGg -3'
miRNA:   3'- aGCa--GCa-GCUGCUCCa---GUa-CAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 4944 0.67 0.939999
Target:  5'- cCGUCgGUCGGCGGGGgccCGUcggCCAUGa -3'
miRNA:   3'- aGCAG-CAGCUGCUCCa--GUAca-GGUGC- -5'
29599 5' -53.7 NC_006151.1 + 18114 0.71 0.804265
Target:  5'- cUCGUCGg-GACGGGGgcgcuggggucgaaCGUGUCCAUGu -3'
miRNA:   3'- -AGCAGCagCUGCUCCa-------------GUACAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 18461 0.67 0.960569
Target:  5'- gUCGUCGUCGuCGccGUCGUaguaGUCCuCGu -3'
miRNA:   3'- -AGCAGCAGCuGCucCAGUA----CAGGuGC- -5'
29599 5' -53.7 NC_006151.1 + 20540 0.67 0.95461
Target:  5'- gCGUCcUCGGCGGGGUCcacgacgcgcaggcuGUcGUgCCACGa -3'
miRNA:   3'- aGCAGcAGCUGCUCCAG---------------UA-CA-GGUGC- -5'
29599 5' -53.7 NC_006151.1 + 23868 0.68 0.924841
Target:  5'- cCGguggCGUUGGCGGGGgcgagCggGUUCACGg -3'
miRNA:   3'- aGCa---GCAGCUGCUCCa----GuaCAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 28053 0.7 0.83516
Target:  5'- aUCGUCGUCGuCGAGGcCgAUGcCgACGu -3'
miRNA:   3'- -AGCAGCAGCuGCUCCaG-UACaGgUGC- -5'
29599 5' -53.7 NC_006151.1 + 37565 0.74 0.664684
Target:  5'- gCGgggcCGcCGGCGAGGcCAUGUCCugGc -3'
miRNA:   3'- aGCa---GCaGCUGCUCCaGUACAGGugC- -5'
29599 5' -53.7 NC_006151.1 + 45093 0.72 0.763807
Target:  5'- gCGguguggCGUCGAUGGGGUCGUG-CCGUGg -3'
miRNA:   3'- aGCa-----GCAGCUGCUCCAGUACaGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 51854 0.71 0.826803
Target:  5'- cCGUaGUCGACGuAGGUggcCAUGUCCAg- -3'
miRNA:   3'- aGCAgCAGCUGC-UCCA---GUACAGGUgc -5'
29599 5' -53.7 NC_006151.1 + 58464 0.67 0.956912
Target:  5'- gCGUCGcgguccaCGACGAcGUCGgcGUCCACGu -3'
miRNA:   3'- aGCAGCa------GCUGCUcCAGUa-CAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 60631 0.68 0.913542
Target:  5'- cCGUCGUCGggGCGGGGcUCccgGcCCGCGc -3'
miRNA:   3'- aGCAGCAGC--UGCUCC-AGua-CaGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 62086 0.68 0.924841
Target:  5'- gUCGUCcUCGGCGcGGUCGg--CCugGg -3'
miRNA:   3'- -AGCAGcAGCUGCuCCAGUacaGGugC- -5'
29599 5' -53.7 NC_006151.1 + 62230 0.68 0.924841
Target:  5'- gUGuUCGUCGAgGucGUCGUGUCCGg- -3'
miRNA:   3'- aGC-AGCAGCUgCucCAGUACAGGUgc -5'
29599 5' -53.7 NC_006151.1 + 62603 0.69 0.888118
Target:  5'- aCGaCGgCGACGAGGUCGUGU--ACGa -3'
miRNA:   3'- aGCaGCaGCUGCUCCAGUACAggUGC- -5'
29599 5' -53.7 NC_006151.1 + 64542 0.7 0.843332
Target:  5'- gCGUCGggggCGGCGAGGcCGUGg-CGCGc -3'
miRNA:   3'- aGCAGCa---GCUGCUCCaGUACagGUGC- -5'
29599 5' -53.7 NC_006151.1 + 65672 0.68 0.924841
Target:  5'- gUCGUcCGgcaCGGCGAGGUCcccGUCCGgGc -3'
miRNA:   3'- -AGCA-GCa--GCUGCUCCAGua-CAGGUgC- -5'
29599 5' -53.7 NC_006151.1 + 72857 0.71 0.800701
Target:  5'- gUUGcUCGUCGGCGAGGcggcggcgccCGUGUCgGCGa -3'
miRNA:   3'- -AGC-AGCAGCUGCUCCa---------GUACAGgUGC- -5'
29599 5' -53.7 NC_006151.1 + 75855 0.76 0.552757
Target:  5'- ---cCGUCGACGGGGcgccccugCGUGUCCGCGu -3'
miRNA:   3'- agcaGCAGCUGCUCCa-------GUACAGGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.