miRNA display CGI


Results 81 - 100 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 66073 0.67 0.828023
Target:  5'- cGGACgGCCgccugggcuuccacGCGGgccugCAGCGCGCGcGCUUu -3'
miRNA:   3'- aCCUG-CGG--------------UGCUa----GUUGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 60797 0.67 0.822047
Target:  5'- gUGcACGCUggGcUCGcCGCGCAGCUCc -3'
miRNA:   3'- -ACcUGCGGugCuAGUuGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 13108 0.67 0.822047
Target:  5'- aGGuCGCgGCgGGUC-ACGCGC-GCUCc -3'
miRNA:   3'- aCCuGCGgUG-CUAGuUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 95432 0.67 0.822047
Target:  5'- uUGGACGUgGCGAgggCGGCGcCGC-GCg- -3'
miRNA:   3'- -ACCUGCGgUGCUa--GUUGC-GCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 63503 0.67 0.822047
Target:  5'- aGGugGCCAgGugggGGCGCGCGGggCg -3'
miRNA:   3'- aCCugCGGUgCuag-UUGCGCGUCgaG- -5'
29600 3' -56.5 NC_006151.1 + 65499 0.67 0.822047
Target:  5'- cGGACGCCgGCGG--AGCGCGCcucCUCc -3'
miRNA:   3'- aCCUGCGG-UGCUagUUGCGCGuc-GAG- -5'
29600 3' -56.5 NC_006151.1 + 66530 0.67 0.822047
Target:  5'- cGcGCGCCGCGcucuUCGggggcGCGCGCGGC-Cg -3'
miRNA:   3'- aCcUGCGGUGCu---AGU-----UGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 73261 0.67 0.822047
Target:  5'- cGGGCGCCagGCGGUUgccggcguuGAcCGUGCGGCg- -3'
miRNA:   3'- aCCUGCGG--UGCUAG---------UU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 100429 0.67 0.822047
Target:  5'- gGGGCGCUGCGcggcGUgAugGCGCAGaCg- -3'
miRNA:   3'- aCCUGCGGUGC----UAgUugCGCGUC-Gag -5'
29600 3' -56.5 NC_006151.1 + 116680 0.67 0.822047
Target:  5'- aGGAagGUCACGAa-GGCGagcaGCAGCUCg -3'
miRNA:   3'- aCCUg-CGGUGCUagUUGCg---CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 135466 0.67 0.822047
Target:  5'- aGGugcGCGCCagcguguccgcGCGGgccaggCGGCGCGCGGcCUCg -3'
miRNA:   3'- aCC---UGCGG-----------UGCUa-----GUUGCGCGUC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 112806 0.67 0.822047
Target:  5'- cGGGCGCgcgucgcugcagCGCGccuUCGccACGCGCGuGCUCa -3'
miRNA:   3'- aCCUGCG------------GUGCu--AGU--UGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 90638 0.67 0.821186
Target:  5'- cGGGCGCUugGCGAUgGGCGUguacaugcgcgggGCGGCg- -3'
miRNA:   3'- aCCUGCGG--UGCUAgUUGCG-------------CGUCGag -5'
29600 3' -56.5 NC_006151.1 + 119465 0.67 0.813361
Target:  5'- gUGGACGCCguGCGcuaCGugGCcgGCAGcCUCg -3'
miRNA:   3'- -ACCUGCGG--UGCua-GUugCG--CGUC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 136693 0.67 0.813361
Target:  5'- ---cCGCCACGugc-GgGCGCAGCUCa -3'
miRNA:   3'- accuGCGGUGCuaguUgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 18692 0.67 0.813361
Target:  5'- cGGGCG-CGCGggCGGCGC-CGGCgUCg -3'
miRNA:   3'- aCCUGCgGUGCuaGUUGCGcGUCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 98200 0.67 0.813361
Target:  5'- --cGCGCCGCGcgggGUCGAgUGCGCGGCg- -3'
miRNA:   3'- accUGCGGUGC----UAGUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 106786 0.67 0.813361
Target:  5'- cUGGACcugGCCGCGG-CG--GCGguGCUCg -3'
miRNA:   3'- -ACCUG---CGGUGCUaGUugCGCguCGAG- -5'
29600 3' -56.5 NC_006151.1 + 128479 0.67 0.813361
Target:  5'- aGGGCGUCAaacaccGUCGcCGUGUGGCUCg -3'
miRNA:   3'- aCCUGCGGUgc----UAGUuGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 111762 0.67 0.813361
Target:  5'- gUGGGCccaGCUGCGAU-GAgGCGCAGCa- -3'
miRNA:   3'- -ACCUG---CGGUGCUAgUUgCGCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.