miRNA display CGI


Results 61 - 80 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 104804 0.66 0.847023
Target:  5'- cGuGCGCCGCGAccuggcggCGGCGCGCgacGGcCUCg -3'
miRNA:   3'- aCcUGCGGUGCUa-------GUUGCGCG---UC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 132368 0.66 0.847023
Target:  5'- aGGGgGCCagGCGcgCGACGuCGCGGUa- -3'
miRNA:   3'- aCCUgCGG--UGCuaGUUGC-GCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 102501 0.66 0.847023
Target:  5'- aUGGACGCCGCG----GCGCgggaccccgGCGGCg- -3'
miRNA:   3'- -ACCUGCGGUGCuaguUGCG---------CGUCGag -5'
29600 3' -56.5 NC_006151.1 + 99515 0.66 0.847023
Target:  5'- gUGGuGCGCCACug-CAugGCGCcGCg- -3'
miRNA:   3'- -ACC-UGCGGUGcuaGUugCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 64221 0.67 0.842164
Target:  5'- gUGGGCGCCucggcguacagggccGCGAcggCGGCGCGgGccacGCUCu -3'
miRNA:   3'- -ACCUGCGG---------------UGCUa--GUUGCGCgU----CGAG- -5'
29600 3' -56.5 NC_006151.1 + 129300 0.67 0.838885
Target:  5'- cGGGCGCgGCGGagCAugGCGgaGGCa- -3'
miRNA:   3'- aCCUGCGgUGCUa-GUugCGCg-UCGag -5'
29600 3' -56.5 NC_006151.1 + 134008 0.67 0.838885
Target:  5'- cGGGgGCCAC---CAGCGCGCAGa-- -3'
miRNA:   3'- aCCUgCGGUGcuaGUUGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 82675 0.67 0.838885
Target:  5'- cGGcGCGCCGCGggCGAgG-GCGGCg- -3'
miRNA:   3'- aCC-UGCGGUGCuaGUUgCgCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 83042 0.67 0.838885
Target:  5'- cGGugGagACGcgCAGCGgcaGCAGCUUg -3'
miRNA:   3'- aCCugCggUGCuaGUUGCg--CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 84641 0.67 0.838885
Target:  5'- cUGGAcaaCGCCAUGGcCGcggGCGCGCGcCUCg -3'
miRNA:   3'- -ACCU---GCGGUGCUaGU---UGCGCGUcGAG- -5'
29600 3' -56.5 NC_006151.1 + 132316 0.67 0.838885
Target:  5'- -aGGCGCCACGAgagCucGCGCGCcguGGC-Ca -3'
miRNA:   3'- acCUGCGGUGCUa--Gu-UGCGCG---UCGaG- -5'
29600 3' -56.5 NC_006151.1 + 106695 0.67 0.838885
Target:  5'- cGGGCGCCgGCGAccUguACGCGCccgugGGCa- -3'
miRNA:   3'- aCCUGCGG-UGCU--AguUGCGCG-----UCGag -5'
29600 3' -56.5 NC_006151.1 + 81601 0.67 0.830557
Target:  5'- cGGG-GCCGC---CGGCGCGCAGCa- -3'
miRNA:   3'- aCCUgCGGUGcuaGUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 89558 0.67 0.830557
Target:  5'- gUGGAgGCCGCGAggcUGAUGgGCAcgcccauggGCUCg -3'
miRNA:   3'- -ACCUgCGGUGCUa--GUUGCgCGU---------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 138624 0.67 0.830557
Target:  5'- aGGACGCCGCcGggGGCGCGcCGGaCUg -3'
miRNA:   3'- aCCUGCGGUGcUagUUGCGC-GUC-GAg -5'
29600 3' -56.5 NC_006151.1 + 139563 0.67 0.830557
Target:  5'- aGcGGCGCC-CGGUCcGCgaGCGCcugGGCUCg -3'
miRNA:   3'- aC-CUGCGGuGCUAGuUG--CGCG---UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 140353 0.67 0.830557
Target:  5'- cUGGcucgcauCGcCCGCGucGUCGA-GCGCGGCUCg -3'
miRNA:   3'- -ACCu------GC-GGUGC--UAGUUgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 51821 0.67 0.830557
Target:  5'- --cGCGCgAUGGUCAugGC-CAGCUUg -3'
miRNA:   3'- accUGCGgUGCUAGUugCGcGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 97356 0.67 0.830557
Target:  5'- gGGAagGCCGCGGcggCGGCggGCGCGGCg- -3'
miRNA:   3'- aCCUg-CGGUGCUa--GUUG--CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 114950 0.67 0.830557
Target:  5'- gUGGGCGCgAUGAUgAcguaggacACGCGCuccuugacGCUCg -3'
miRNA:   3'- -ACCUGCGgUGCUAgU--------UGCGCGu-------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.