miRNA display CGI


Results 41 - 60 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 56941 0.66 0.854964
Target:  5'- gGGGCGUCGcCGGcgcUCAgcgccucgaGCGCGCGGUUg -3'
miRNA:   3'- aCCUGCGGU-GCU---AGU---------UGCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 52093 0.66 0.854964
Target:  5'- --aGCGCCGuCGAgagCAGCGCGCcGCg- -3'
miRNA:   3'- accUGCGGU-GCUa--GUUGCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 64614 0.66 0.854964
Target:  5'- aGcGGCGCCGCGccgccggccgCGGgGCGCGGCg- -3'
miRNA:   3'- aC-CUGCGGUGCua--------GUUgCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 27186 0.66 0.854964
Target:  5'- gGGGCGCCAgGGggc-CGCGCAGa-- -3'
miRNA:   3'- aCCUGCGGUgCUaguuGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 11101 0.66 0.854964
Target:  5'- aGGGCGCUGCGAccCAGagagaGCGCcgAGCUa -3'
miRNA:   3'- aCCUGCGGUGCUa-GUUg----CGCG--UCGAg -5'
29600 3' -56.5 NC_006151.1 + 68721 0.66 0.854964
Target:  5'- aGGAaaaCGCCGCccagCAGCGgGCcGCUCu -3'
miRNA:   3'- aCCU---GCGGUGcua-GUUGCgCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 91268 0.66 0.854964
Target:  5'- aGGACGcCCGCGuccgCAaaguacGCGCGCcGCgUCa -3'
miRNA:   3'- aCCUGC-GGUGCua--GU------UGCGCGuCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 114327 0.66 0.854964
Target:  5'- cGGGgGCC-UGcgCGACGUGCGcguGCUCu -3'
miRNA:   3'- aCCUgCGGuGCuaGUUGCGCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 672 0.66 0.854964
Target:  5'- cGGGCuCCGCGGaucgcaUCGGCGCGCcgAGCc- -3'
miRNA:   3'- aCCUGcGGUGCU------AGUUGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 128794 0.66 0.854964
Target:  5'- cGGuCGCCucgGCGAgcgCGGCGCGCguGGCc- -3'
miRNA:   3'- aCCuGCGG---UGCUa--GUUGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 114156 0.66 0.854964
Target:  5'- cGGGCGCaGCGAc---CGCGCGGCccUCg -3'
miRNA:   3'- aCCUGCGgUGCUaguuGCGCGUCG--AG- -5'
29600 3' -56.5 NC_006151.1 + 100226 0.66 0.854964
Target:  5'- cGGGCGCCGUGGcCgAGCGCGUGguggcGCUCg -3'
miRNA:   3'- aCCUGCGGUGCUaG-UUGCGCGU-----CGAG- -5'
29600 3' -56.5 NC_006151.1 + 78142 0.66 0.854964
Target:  5'- cGGGCGCCuCGGaCGACGCcuCGGC-Cg -3'
miRNA:   3'- aCCUGCGGuGCUaGUUGCGc-GUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 70568 0.66 0.854964
Target:  5'- aUGGACGCCgccACGcgCAccACGgccgaGCGGCUg -3'
miRNA:   3'- -ACCUGCGG---UGCuaGU--UGCg----CGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 68244 0.66 0.854964
Target:  5'- cGGGCGCguCaGGUagacGCGCGCGGCg- -3'
miRNA:   3'- aCCUGCGguG-CUAgu--UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 31624 0.66 0.854179
Target:  5'- gGGAUGCCGCGccggCAcgagcgcacgcggGCGCGCGGg-- -3'
miRNA:   3'- aCCUGCGGUGCua--GU-------------UGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 132368 0.66 0.847023
Target:  5'- aGGGgGCCagGCGcgCGACGuCGCGGUa- -3'
miRNA:   3'- aCCUgCGG--UGCuaGUUGC-GCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 104804 0.66 0.847023
Target:  5'- cGuGCGCCGCGAccuggcggCGGCGCGCgacGGcCUCg -3'
miRNA:   3'- aCcUGCGGUGCUa-------GUUGCGCG---UC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 103075 0.66 0.847023
Target:  5'- cGGGCaCCugGAgCGGCGCG-AGCUg -3'
miRNA:   3'- aCCUGcGGugCUaGUUGCGCgUCGAg -5'
29600 3' -56.5 NC_006151.1 + 69140 0.66 0.847023
Target:  5'- aGGGCG-CGCGGgugcUCGACGCcguGCcGCUCg -3'
miRNA:   3'- aCCUGCgGUGCU----AGUUGCG---CGuCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.