miRNA display CGI


Results 41 - 60 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 27186 0.66 0.854964
Target:  5'- gGGGCGCCAgGGggc-CGCGCAGa-- -3'
miRNA:   3'- aCCUGCGGUgCUaguuGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 27216 0.66 0.847023
Target:  5'- gGGGCcCCGCGcgccGUgGACGCGCAcCUCc -3'
miRNA:   3'- aCCUGcGGUGC----UAgUUGCGCGUcGAG- -5'
29600 3' -56.5 NC_006151.1 + 28095 0.74 0.421786
Target:  5'- cGGGCGuCCuCGAgCGGgGCGCGGCUCc -3'
miRNA:   3'- aCCUGC-GGuGCUaGUUgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 30265 0.7 0.626991
Target:  5'- cGGGCGCCACaGA-CAGCGgCGCGGg-- -3'
miRNA:   3'- aCCUGCGGUG-CUaGUUGC-GCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 31624 0.66 0.854179
Target:  5'- gGGAUGCCGCGccggCAcgagcgcacgcggGCGCGCGGg-- -3'
miRNA:   3'- aCCUGCGGUGCua--GU-------------UGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 39148 0.68 0.767608
Target:  5'- cUGGgacccGCGCCGCGG-CGGCcucucgGCGCuGCUCg -3'
miRNA:   3'- -ACC-----UGCGGUGCUaGUUG------CGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 39244 0.68 0.748388
Target:  5'- cGGGCGCCcCGAcaucggccgccUCAACGCccagggggugcuGCuGCUCu -3'
miRNA:   3'- aCCUGCGGuGCU-----------AGUUGCG------------CGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 39481 0.71 0.596152
Target:  5'- cGGGUGCCGCGAgCucCGCGCGGC-Cg -3'
miRNA:   3'- aCCUGCGGUGCUaGuuGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 39771 0.72 0.535374
Target:  5'- cGGGCGCCGCcuucGggCAcCGCGCGGC-Ca -3'
miRNA:   3'- aCCUGCGGUG----CuaGUuGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 43389 0.66 0.8627
Target:  5'- gUGGugGCCGuCGcUCGugGC-CGGCa- -3'
miRNA:   3'- -ACCugCGGU-GCuAGUugCGcGUCGag -5'
29600 3' -56.5 NC_006151.1 + 45068 0.66 0.870225
Target:  5'- gGGACGgCugGAg-AGCGCGCAccGCg- -3'
miRNA:   3'- aCCUGCgGugCUagUUGCGCGU--CGag -5'
29600 3' -56.5 NC_006151.1 + 45851 0.69 0.68855
Target:  5'- cUGGACGUCGCGGccacCGAgGCGCAGaCg- -3'
miRNA:   3'- -ACCUGCGGUGCUa---GUUgCGCGUC-Gag -5'
29600 3' -56.5 NC_006151.1 + 46487 0.72 0.555436
Target:  5'- cGGGCGCCuCGAgCAGCGgGguGCa- -3'
miRNA:   3'- aCCUGCGGuGCUaGUUGCgCguCGag -5'
29600 3' -56.5 NC_006151.1 + 47265 0.68 0.786339
Target:  5'- aUGGAcCGCUccgGCGcgCAGCGUccGCGGCUg -3'
miRNA:   3'- -ACCU-GCGG---UGCuaGUUGCG--CGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 48083 0.69 0.738619
Target:  5'- aGGAUacaccaGCCGCGAugucgccgcUCGugGCGguGCUg -3'
miRNA:   3'- aCCUG------CGGUGCU---------AGUugCGCguCGAg -5'
29600 3' -56.5 NC_006151.1 + 49230 0.69 0.698696
Target:  5'- cGGcucccACGCCcCGcUCGGCuggGCGCGGCUCg -3'
miRNA:   3'- aCC-----UGCGGuGCuAGUUG---CGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 49591 0.67 0.804509
Target:  5'- -cGGCGCCcCGGcCAGCGCGCuGC-Cg -3'
miRNA:   3'- acCUGCGGuGCUaGUUGCGCGuCGaG- -5'
29600 3' -56.5 NC_006151.1 + 50006 0.68 0.777039
Target:  5'- uUGcGCGCCGCGcgCGcggccCGCGCGGCg- -3'
miRNA:   3'- -ACcUGCGGUGCuaGUu----GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 50391 0.75 0.370677
Target:  5'- cGGGCcCCGCGGUCcuCGCGCGGCc- -3'
miRNA:   3'- aCCUGcGGUGCUAGuuGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 50607 0.68 0.748388
Target:  5'- cGGGCcccgcgccGCCGCGG-CAGCGUGCAcGcCUCg -3'
miRNA:   3'- aCCUG--------CGGUGCUaGUUGCGCGU-C-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.