miRNA display CGI


Results 41 - 60 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 19892 0.72 0.534377
Target:  5'- aGGgccagcaGCGCCAgGAgcugcgCGGCGCGCAGCa- -3'
miRNA:   3'- aCC-------UGCGGUgCUa-----GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 104030 0.72 0.535374
Target:  5'- aGGugGagCGCGcgCAGCGC-CAGCUCu -3'
miRNA:   3'- aCCugCg-GUGCuaGUUGCGcGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 39771 0.72 0.535374
Target:  5'- cGGGCGCCGCcuucGggCAcCGCGCGGC-Ca -3'
miRNA:   3'- aCCUGCGGUG----CuaGUuGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 75056 0.72 0.535374
Target:  5'- cGGGCGCgACGAagaagUCAAaggccggGUGCAGCUCc -3'
miRNA:   3'- aCCUGCGgUGCU-----AGUUg------CGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 77106 0.72 0.545375
Target:  5'- cGGGCGCgGCGggC-GCGCGCccacaaaggccgAGCUCa -3'
miRNA:   3'- aCCUGCGgUGCuaGuUGCGCG------------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 96752 0.72 0.545375
Target:  5'- cGGAgGCCAUGG-CGGCGUGU-GCUCg -3'
miRNA:   3'- aCCUgCGGUGCUaGUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 138141 0.72 0.545375
Target:  5'- gUGGACGCgGagGAcCGGCGCGC-GCUCg -3'
miRNA:   3'- -ACCUGCGgUg-CUaGUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 71011 0.72 0.545375
Target:  5'- gUGGGCGCCAUGcgC--CGCG-AGCUCg -3'
miRNA:   3'- -ACCUGCGGUGCuaGuuGCGCgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 96204 0.72 0.545375
Target:  5'- gGGGCGCCGCGucgcCGugGCgGCGGC-Cg -3'
miRNA:   3'- aCCUGCGGUGCua--GUugCG-CGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 138711 0.72 0.555436
Target:  5'- -cGGCGCUGCGcgCcGCGCGCGGgUCg -3'
miRNA:   3'- acCUGCGGUGCuaGuUGCGCGUCgAG- -5'
29600 3' -56.5 NC_006151.1 + 46487 0.72 0.555436
Target:  5'- cGGGCGCCuCGAgCAGCGgGguGCa- -3'
miRNA:   3'- aCCUGCGGuGCUaGUUGCgCguCGag -5'
29600 3' -56.5 NC_006151.1 + 117277 0.72 0.555436
Target:  5'- cGGcCGCCGcCGA-CAGCGCGCGcgcgagcuGCUCg -3'
miRNA:   3'- aCCuGCGGU-GCUaGUUGCGCGU--------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 99191 0.72 0.555436
Target:  5'- gUGGACGCCACGggCGugugggAgGCGguGCa- -3'
miRNA:   3'- -ACCUGCGGUGCuaGU------UgCGCguCGag -5'
29600 3' -56.5 NC_006151.1 + 101964 0.72 0.555436
Target:  5'- aGcACGCaCACGGUCGGCGgGCGGCcgUCg -3'
miRNA:   3'- aCcUGCG-GUGCUAGUUGCgCGUCG--AG- -5'
29600 3' -56.5 NC_006151.1 + 6400 0.72 0.565551
Target:  5'- cGGGCGCCgagcGCGGagAGCGgGCGGCg- -3'
miRNA:   3'- aCCUGCGG----UGCUagUUGCgCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 68285 0.72 0.565551
Target:  5'- cGGGCGCCACGGcggccaGGCGCGC-GCcCa -3'
miRNA:   3'- aCCUGCGGUGCUag----UUGCGCGuCGaG- -5'
29600 3' -56.5 NC_006151.1 + 53988 0.72 0.565551
Target:  5'- cGGGCGUCGCGGcgagcUCccgGACGCGCuccacgaucGGCUCg -3'
miRNA:   3'- aCCUGCGGUGCU-----AG---UUGCGCG---------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 87579 0.72 0.565551
Target:  5'- cGGACGUcuccgccggCACcAUCGACGC-CAGCUCg -3'
miRNA:   3'- aCCUGCG---------GUGcUAGUUGCGcGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 57469 0.71 0.573677
Target:  5'- aGGugccGCGCCGCGGcggccucgcaggCGACGCGCAcgcGCUCg -3'
miRNA:   3'- aCC----UGCGGUGCUa-----------GUUGCGCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 123286 0.71 0.575713
Target:  5'- gUGGACGagCGCGAgacgggcugcuUCGACGCGCAcaGCUUc -3'
miRNA:   3'- -ACCUGCg-GUGCU-----------AGUUGCGCGU--CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.