miRNA display CGI


Results 21 - 40 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 130174 0.74 0.443385
Target:  5'- gUGGAagGCCGCGAagcggacguccUCGgggugcccgcugaggACGCGCAGCUCc -3'
miRNA:   3'- -ACCUg-CGGUGCU-----------AGU---------------UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 132545 0.74 0.448882
Target:  5'- cGGcCGCCACGuac-GCGgGCAGCUCc -3'
miRNA:   3'- aCCuGCGGUGCuaguUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 74420 0.74 0.448882
Target:  5'- aGGAUGUgcugaaagugCGCGccGUUGACGCGCAGCUCc -3'
miRNA:   3'- aCCUGCG----------GUGC--UAGUUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 67486 0.73 0.46747
Target:  5'- cGGGCacccGCaCACGA---GCGCGCGGCUCg -3'
miRNA:   3'- aCCUG----CG-GUGCUaguUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 60870 0.73 0.476912
Target:  5'- aGGAC-CCGCGG-CAGcCGCGCAGCa- -3'
miRNA:   3'- aCCUGcGGUGCUaGUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 104904 0.73 0.476912
Target:  5'- gUGGACGCgGCGG-CGGCGCGCGaccGCg- -3'
miRNA:   3'- -ACCUGCGgUGCUaGUUGCGCGU---CGag -5'
29600 3' -56.5 NC_006151.1 + 140050 0.73 0.486447
Target:  5'- cGGccgcACGCCAcCGAggCGGCGCGCGuGCUCc -3'
miRNA:   3'- aCC----UGCGGU-GCUa-GUUGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 90220 0.73 0.496071
Target:  5'- aGGACGCCGgccgaGAUC-GCGuCGCGGCUg -3'
miRNA:   3'- aCCUGCGGUg----CUAGuUGC-GCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 64546 0.73 0.496071
Target:  5'- cGGGgGCgGCGAggccgUGGCGCGCcAGCUCg -3'
miRNA:   3'- aCCUgCGgUGCUa----GUUGCGCG-UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 17326 0.73 0.496071
Target:  5'- gGGGCGCCGCG-UCAGCucGUGCGuCUCg -3'
miRNA:   3'- aCCUGCGGUGCuAGUUG--CGCGUcGAG- -5'
29600 3' -56.5 NC_006151.1 + 97551 0.73 0.496071
Target:  5'- cGGAgGCCGuCGucgccgcCGAgGCGCAGCUCg -3'
miRNA:   3'- aCCUgCGGU-GCua-----GUUgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 97476 0.73 0.505781
Target:  5'- cGGcucacCGCCACG-UgGACGCGCAGCg- -3'
miRNA:   3'- aCCu----GCGGUGCuAgUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 67670 0.73 0.505781
Target:  5'- cGGAagagGCC-CGAgUCGcucGCGCGCAGCUCc -3'
miRNA:   3'- aCCUg---CGGuGCU-AGU---UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 118099 0.72 0.512626
Target:  5'- aGGcgcuGCGCCGCGAccugcuggcgcugcUCGugGCGCGCAGCg- -3'
miRNA:   3'- aCC----UGCGGUGCU--------------AGU--UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 84411 0.72 0.515571
Target:  5'- gUGGGCGCgGUGAUaaggCGGCGCGCGGCg- -3'
miRNA:   3'- -ACCUGCGgUGCUA----GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 102950 0.72 0.524447
Target:  5'- cUGGACGCggcgcccgccgccCACGA-CGGCGCGCuGCUg -3'
miRNA:   3'- -ACCUGCG-------------GUGCUaGUUGCGCGuCGAg -5'
29600 3' -56.5 NC_006151.1 + 69578 0.72 0.525437
Target:  5'- gGGugccGCGCCGCGAcgagcUCGGcCGCGCGGCg- -3'
miRNA:   3'- aCC----UGCGGUGCU-----AGUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 78217 0.72 0.525437
Target:  5'- cGGGCuCCACGucgcUCAcggGCGCGCAGCg- -3'
miRNA:   3'- aCCUGcGGUGCu---AGU---UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 2017 0.72 0.525437
Target:  5'- gGGGCGCCcCGcUCAGCGgaGCAGCa- -3'
miRNA:   3'- aCCUGCGGuGCuAGUUGCg-CGUCGag -5'
29600 3' -56.5 NC_006151.1 + 20880 0.72 0.525437
Target:  5'- aGGcGCGCUugGgGUCGAgGCGCAGCa- -3'
miRNA:   3'- aCC-UGCGGugC-UAGUUgCGCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.