miRNA display CGI


Results 21 - 40 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 15385 0.69 0.68855
Target:  5'- gUGcGACGUCgACGAggaCGACGC-CGGCUCg -3'
miRNA:   3'- -AC-CUGCGG-UGCUa--GUUGCGcGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 15879 0.66 0.8627
Target:  5'- aGGACGCCGCccgccGGggGACGCGC-GCc- -3'
miRNA:   3'- aCCUGCGGUG-----CUagUUGCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 16999 0.66 0.884622
Target:  5'- gUGGACcCgCGCGAaCAugGCGCGGgUg -3'
miRNA:   3'- -ACCUGcG-GUGCUaGUugCGCGUCgAg -5'
29600 3' -56.5 NC_006151.1 + 17076 0.66 0.884622
Target:  5'- cGGGcCGCCGCcgGGUCAgGCGCGC-GCcCg -3'
miRNA:   3'- aCCU-GCGGUG--CUAGU-UGCGCGuCGaG- -5'
29600 3' -56.5 NC_006151.1 + 17108 0.69 0.718807
Target:  5'- gGGGCGCCGgGGgcucCGGCGgCGguGCUg -3'
miRNA:   3'- aCCUGCGGUgCUa---GUUGC-GCguCGAg -5'
29600 3' -56.5 NC_006151.1 + 17326 0.73 0.496071
Target:  5'- gGGGCGCCGCG-UCAGCucGUGCGuCUCg -3'
miRNA:   3'- aCCUGCGGUGCuAGUUG--CGCGUcGAG- -5'
29600 3' -56.5 NC_006151.1 + 17493 0.67 0.800923
Target:  5'- cGGcGCGCCGCugcugcaccagCGACGCGUAGCa- -3'
miRNA:   3'- aCC-UGCGGUGcua--------GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 17820 0.68 0.748388
Target:  5'- cUGGGCGCgGCGG--GGCGgGCGGC-Ca -3'
miRNA:   3'- -ACCUGCGgUGCUagUUGCgCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 17873 0.66 0.870225
Target:  5'- -uGAUGCCccCGAUCAGCGcCGaCAGCg- -3'
miRNA:   3'- acCUGCGGu-GCUAGUUGC-GC-GUCGag -5'
29600 3' -56.5 NC_006151.1 + 18692 0.67 0.813361
Target:  5'- cGGGCG-CGCGggCGGCGC-CGGCgUCg -3'
miRNA:   3'- aCCUGCgGUGCuaGUUGCGcGUCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 19892 0.72 0.534377
Target:  5'- aGGgccagcaGCGCCAgGAgcugcgCGGCGCGCAGCa- -3'
miRNA:   3'- aCC-------UGCGGUgCUa-----GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 20140 0.77 0.309396
Target:  5'- cGGGCGCCGCGGgggCGGCGCGUGGa-- -3'
miRNA:   3'- aCCUGCGGUGCUa--GUUGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 20484 0.71 0.606415
Target:  5'- gGGGCGCgGgGGUCGuCG-GCGGCUCu -3'
miRNA:   3'- aCCUGCGgUgCUAGUuGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 20772 0.66 0.884622
Target:  5'- cGGACGCgCGCcg--GGCGaGCGGCUCg -3'
miRNA:   3'- aCCUGCG-GUGcuagUUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 20880 0.72 0.525437
Target:  5'- aGGcGCGCUugGgGUCGAgGCGCAGCa- -3'
miRNA:   3'- aCC-UGCGGugC-UAGUUgCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 21046 0.66 0.8627
Target:  5'- aGGACGCC-Cc--CGACGCGCGGg-- -3'
miRNA:   3'- aCCUGCGGuGcuaGUUGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 21952 0.66 0.877534
Target:  5'- cGGACGgguccaCCAC-AUCGGCGUGguGCg- -3'
miRNA:   3'- aCCUGC------GGUGcUAGUUGCGCguCGag -5'
29600 3' -56.5 NC_006151.1 + 23029 0.66 0.877534
Target:  5'- gUGGAgGCgGCGAagaAGCGgGCGGC-Cg -3'
miRNA:   3'- -ACCUgCGgUGCUag-UUGCgCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 24517 0.79 0.238202
Target:  5'- uUGGGCGCCGCcacguugCAGCGCGCGGCc- -3'
miRNA:   3'- -ACCUGCGGUGcua----GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 26936 0.71 0.606415
Target:  5'- aGGACG-CGCGGUCGuagacguCGCGCucguugAGCUCg -3'
miRNA:   3'- aCCUGCgGUGCUAGUu------GCGCG------UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.