miRNA display CGI


Results 21 - 40 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 134008 0.67 0.838885
Target:  5'- cGGGgGCCAC---CAGCGCGCAGa-- -3'
miRNA:   3'- aCCUgCGGUGcuaGUUGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 132545 0.74 0.448882
Target:  5'- cGGcCGCCACGuac-GCGgGCAGCUCc -3'
miRNA:   3'- aCCuGCGGUGCuaguUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 132368 0.66 0.847023
Target:  5'- aGGGgGCCagGCGcgCGACGuCGCGGUa- -3'
miRNA:   3'- aCCUgCGG--UGCuaGUUGC-GCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 132316 0.67 0.838885
Target:  5'- -aGGCGCCACGAgagCucGCGCGCcguGGC-Ca -3'
miRNA:   3'- acCUGCGGUGCUa--Gu-UGCGCG---UCGaG- -5'
29600 3' -56.5 NC_006151.1 + 132130 0.7 0.647583
Target:  5'- aGGcccagcucGCGCCgGCGGUgguugaCGGCGCGCAGCUg -3'
miRNA:   3'- aCC--------UGCGG-UGCUA------GUUGCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 132051 0.68 0.786339
Target:  5'- cGGcaGCGCgGCGGagAACG-GCGGCUCc -3'
miRNA:   3'- aCC--UGCGgUGCUagUUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 131786 0.75 0.3957
Target:  5'- cGGGCGCCGCcgucGUCAGCGCGCcauccuccucGGcCUCg -3'
miRNA:   3'- aCCUGCGGUGc---UAGUUGCGCG----------UC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 131656 0.81 0.159573
Target:  5'- cGGGCGCCGCaGAUCcgaccGCGCGCGGCgUCa -3'
miRNA:   3'- aCCUGCGGUG-CUAGu----UGCGCGUCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 131556 0.7 0.678357
Target:  5'- cGGGCGCCgcACGggCccCGCGUcGCUCa -3'
miRNA:   3'- aCCUGCGG--UGCuaGuuGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 130723 0.66 0.870225
Target:  5'- cGGGgGCC-CGcgCGGCcgcgGCGCAGCg- -3'
miRNA:   3'- aCCUgCGGuGCuaGUUG----CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 130174 0.74 0.443385
Target:  5'- gUGGAagGCCGCGAagcggacguccUCGgggugcccgcugaggACGCGCAGCUCc -3'
miRNA:   3'- -ACCUg-CGGUGCU-----------AGU---------------UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 130054 0.71 0.593078
Target:  5'- gUGGugcauCGCgagCACGGUCAGCGUgaacaugggcgcgaGCAGCUCg -3'
miRNA:   3'- -ACCu----GCG---GUGCUAGUUGCG--------------CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 130017 0.67 0.795498
Target:  5'- cGGcgcGCGCCACGGccgUCGugagccaGCGCAGCg- -3'
miRNA:   3'- aCC---UGCGGUGCU---AGUug-----CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 129739 0.67 0.804509
Target:  5'- cGGGC-CCGCGA--GGCGCuGCAGCa- -3'
miRNA:   3'- aCCUGcGGUGCUagUUGCG-CGUCGag -5'
29600 3' -56.5 NC_006151.1 + 129545 0.7 0.668126
Target:  5'- cGGG-GCCGCcGUCAAC-CGCAGCUg -3'
miRNA:   3'- aCCUgCGGUGcUAGUUGcGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 129300 0.67 0.838885
Target:  5'- cGGGCGCgGCGGagCAugGCGgaGGCa- -3'
miRNA:   3'- aCCUGCGgUGCUa-GUugCGCg-UCGag -5'
29600 3' -56.5 NC_006151.1 + 128794 0.66 0.854964
Target:  5'- cGGuCGCCucgGCGAgcgCGGCGCGCguGGCc- -3'
miRNA:   3'- aCCuGCGG---UGCUa--GUUGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 128479 0.67 0.813361
Target:  5'- aGGGCGUCAaacaccGUCGcCGUGUGGCUCg -3'
miRNA:   3'- aCCUGCGGUgc----UAGUuGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 128236 0.69 0.742538
Target:  5'- gUGGGCGCCAggucgcCGAUCaggugGuggaagcggcacugcGCGCGCAGCg- -3'
miRNA:   3'- -ACCUGCGGU------GCUAG-----U---------------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 128034 0.66 0.877534
Target:  5'- cUGcGACGcCCGCGG-CAGCG-GCGGCa- -3'
miRNA:   3'- -AC-CUGC-GGUGCUaGUUGCgCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.