miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 141833 0.68 0.758054
Target:  5'- cGGGgGucCCGCGcUCGACGCGaggGGCUCg -3'
miRNA:   3'- aCCUgC--GGUGCuAGUUGCGCg--UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 140353 0.67 0.830557
Target:  5'- cUGGcucgcauCGcCCGCGucGUCGA-GCGCGGCUCg -3'
miRNA:   3'- -ACCu------GC-GGUGC--UAGUUgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 140050 0.73 0.486447
Target:  5'- cGGccgcACGCCAcCGAggCGGCGCGCGuGCUCc -3'
miRNA:   3'- aCC----UGCGGU-GCUa-GUUGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 139938 0.68 0.748388
Target:  5'- gUGGGcCGCCGuccuCGAguUCGGCGCcgaGCAGUUCa -3'
miRNA:   3'- -ACCU-GCGGU----GCU--AGUUGCG---CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 139563 0.67 0.830557
Target:  5'- aGcGGCGCC-CGGUCcGCgaGCGCcugGGCUCg -3'
miRNA:   3'- aC-CUGCGGuGCUAGuUG--CGCG---UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 139080 0.68 0.758054
Target:  5'- cGGGCuccGCCugGGggcgcgCAugGCGCuGUUCa -3'
miRNA:   3'- aCCUG---CGGugCUa-----GUugCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 138924 0.67 0.795498
Target:  5'- -cGcCGCCACGGUCAuCGgcUGCAGCUa -3'
miRNA:   3'- acCuGCGGUGCUAGUuGC--GCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 138711 0.72 0.555436
Target:  5'- -cGGCGCUGCGcgCcGCGCGCGGgUCg -3'
miRNA:   3'- acCUGCGGUGCuaGuUGCGCGUCgAG- -5'
29600 3' -56.5 NC_006151.1 + 138624 0.67 0.830557
Target:  5'- aGGACGCCGCcGggGGCGCGcCGGaCUg -3'
miRNA:   3'- aCCUGCGGUGcUagUUGCGC-GUC-GAg -5'
29600 3' -56.5 NC_006151.1 + 138230 0.69 0.708784
Target:  5'- cGGGCGCgcgcacgaguaCGCGGgcgCGAcCGCGCAGCg- -3'
miRNA:   3'- aCCUGCG-----------GUGCUa--GUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 138141 0.72 0.545375
Target:  5'- gUGGACGCgGagGAcCGGCGCGC-GCUCg -3'
miRNA:   3'- -ACCUGCGgUg-CUaGUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 137740 0.71 0.606415
Target:  5'- cGGugGCCggcgccgacACGGUCcgcggccuGGCGCGCGuGCUCc -3'
miRNA:   3'- aCCugCGG---------UGCUAG--------UUGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 137307 0.7 0.647583
Target:  5'- cGGGuucCGCCGCGcggugcUCGACGCGCucgcgcuGCUCu -3'
miRNA:   3'- aCCU---GCGGUGCu-----AGUUGCGCGu------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 137194 0.69 0.728755
Target:  5'- gUGaGcCGCCACGAgguguUCAACGCcCGGCUg -3'
miRNA:   3'- -AC-CuGCGGUGCU-----AGUUGCGcGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 137114 0.77 0.288492
Target:  5'- gGGACGCCugGGggcgcgCGACgGCGCGGCg- -3'
miRNA:   3'- aCCUGCGGugCUa-----GUUG-CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 136809 0.67 0.813361
Target:  5'- --cGCGCuCGCGGcCGACGCGCcgcgcgGGCUCu -3'
miRNA:   3'- accUGCG-GUGCUaGUUGCGCG------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 136693 0.67 0.813361
Target:  5'- ---cCGCCACGugc-GgGCGCAGCUCa -3'
miRNA:   3'- accuGCGGUGCuaguUgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 136651 0.68 0.767608
Target:  5'- gGGGCGCUcgccccuCGGggAGCGCGCGGC-Cg -3'
miRNA:   3'- aCCUGCGGu------GCUagUUGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 135466 0.67 0.822047
Target:  5'- aGGugcGCGCCagcguguccgcGCGGgccaggCGGCGCGCGGcCUCg -3'
miRNA:   3'- aCC---UGCGG-----------UGCUa-----GUUGCGCGUC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 134173 0.66 0.873175
Target:  5'- aGGugGCgcugcccaccggauaCGCGAugcUCGuCGCGCAGCg- -3'
miRNA:   3'- aCCugCG---------------GUGCU---AGUuGCGCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.