miRNA display CGI


Results 61 - 80 of 316 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 51055 0.67 0.804509
Target:  5'- gUGGugGCgAUGGUgAugGCGgCGGcCUCc -3'
miRNA:   3'- -ACCugCGgUGCUAgUugCGC-GUC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 51224 0.67 0.795498
Target:  5'- cGGGC-CCGCGcaggCGGCGCgagcgcucggcGCAGCUCc -3'
miRNA:   3'- aCCUGcGGUGCua--GUUGCG-----------CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 51821 0.67 0.830557
Target:  5'- --cGCGCgAUGGUCAugGC-CAGCUUg -3'
miRNA:   3'- accUGCGgUGCUAGUugCGcGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 51937 0.67 0.795498
Target:  5'- aGGAaGCCGCucuGGUCGcgcagcaccACGCGCGGCg- -3'
miRNA:   3'- aCCUgCGGUG---CUAGU---------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 51981 0.68 0.757093
Target:  5'- cGaGGCGagcagcuCCGCGGUgcCGGCGUGCAGCUUg -3'
miRNA:   3'- aC-CUGC-------GGUGCUA--GUUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 52093 0.66 0.854964
Target:  5'- --aGCGCCGuCGAgagCAGCGCGCcGCg- -3'
miRNA:   3'- accUGCGGU-GCUa--GUUGCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 52400 0.7 0.651698
Target:  5'- cGGGCGCCGcCGcgcccgagaaGUCAaagugcuccucgggcACGCGCAGCg- -3'
miRNA:   3'- aCCUGCGGU-GC----------UAGU---------------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 53062 0.69 0.728755
Target:  5'- cGGGCaCCACGAagcugUCGACgagGCGCAgguGCUCg -3'
miRNA:   3'- aCCUGcGGUGCU-----AGUUG---CGCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 53869 0.67 0.795498
Target:  5'- cGGAgccggcauUGCCGCuGAUCAguACGCggcgaaggGCAGCUCc -3'
miRNA:   3'- aCCU--------GCGGUG-CUAGU--UGCG--------CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 53988 0.72 0.565551
Target:  5'- cGGGCGUCGCGGcgagcUCccgGACGCGCuccacgaucGGCUCg -3'
miRNA:   3'- aCCUGCGGUGCU-----AG---UUGCGCG---------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 54755 0.68 0.777039
Target:  5'- cGcGGCGUCACcAUCAuggacuacgaccGCGUGCAGCUg -3'
miRNA:   3'- aC-CUGCGGUGcUAGU------------UGCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 55224 0.74 0.421786
Target:  5'- cGGGCaCCACGGcgcCGGCGCGCAGC-Cg -3'
miRNA:   3'- aCCUGcGGUGCUa--GUUGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 56394 0.66 0.847023
Target:  5'- -cGGCGCCACGc---GCGCGCucaacacGCUCa -3'
miRNA:   3'- acCUGCGGUGCuaguUGCGCGu------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 56941 0.66 0.854964
Target:  5'- gGGGCGUCGcCGGcgcUCAgcgccucgaGCGCGCGGUUg -3'
miRNA:   3'- aCCUGCGGU-GCU---AGU---------UGCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 57091 0.7 0.668126
Target:  5'- aGGcgcacgcaGCGCCGCGAgCAGCGCGC-GC-Cg -3'
miRNA:   3'- aCC--------UGCGGUGCUaGUUGCGCGuCGaG- -5'
29600 3' -56.5 NC_006151.1 + 57469 0.71 0.573677
Target:  5'- aGGugccGCGCCGCGGcggccucgcaggCGACGCGCAcgcGCUCg -3'
miRNA:   3'- aCC----UGCGGUGCUa-----------GUUGCGCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 58421 0.66 0.877534
Target:  5'- cUGGGCgugcggcaGCCACGccUCGguggcgugcgcGCGCGCGGCgUCg -3'
miRNA:   3'- -ACCUG--------CGGUGCu-AGU-----------UGCGCGUCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 59367 0.7 0.657865
Target:  5'- gGGGCGCCGCGcggccGUCGuCGCGUccAGCa- -3'
miRNA:   3'- aCCUGCGGUGC-----UAGUuGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 59837 0.68 0.786339
Target:  5'- cGGcCGCCAccggcCGGUCcggGGgGCGCAGCUg -3'
miRNA:   3'- aCCuGCGGU-----GCUAG---UUgCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 59929 0.71 0.585915
Target:  5'- -aGGCGCgCGCcGUCAGCG-GCGGCUCg -3'
miRNA:   3'- acCUGCG-GUGcUAGUUGCgCGUCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.