miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 129825 0.83 0.044198
Target:  5'- cGGAGC-GCGCGGCGgcguAGCCCAGCGa- -3'
miRNA:   3'- aCCUCGaCGCGCCGC----UCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 75397 0.77 0.115211
Target:  5'- cGGGGCggGUGCGuGCGcggguccgggaGGCCCGGCGUGg -3'
miRNA:   3'- aCCUCGa-CGCGC-CGC-----------UCGGGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 19907 0.77 0.12241
Target:  5'- aGGAGCUGCGCGGCGcgcagcagaaagGGCcgcauggucucaaccCCGGUGUGu -3'
miRNA:   3'- aCCUCGACGCGCCGC------------UCG---------------GGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 86716 0.75 0.151763
Target:  5'- gGGAGCUGguCGCGGCgcgccgccgcGAGgCCGGCGUGc -3'
miRNA:   3'- aCCUCGAC--GCGCCG----------CUCgGGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 5086 0.75 0.155564
Target:  5'- cGGGGC--CGCGGCGGGCgCCGGCGg- -3'
miRNA:   3'- aCCUCGacGCGCCGCUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 20127 0.75 0.163427
Target:  5'- cGGGGCUGgGgGGCGGGCgCCGcgggggcggcGCGUGg -3'
miRNA:   3'- aCCUCGACgCgCCGCUCG-GGU----------CGCAC- -5'
29600 5' -63.1 NC_006151.1 + 19127 0.75 0.147679
Target:  5'- gGGGGC-GCGCGcGCGuaguaccAGUCCAGCGUGg -3'
miRNA:   3'- aCCUCGaCGCGC-CGC-------UCGGGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 82129 0.74 0.198545
Target:  5'- gUGGaAGCggcccGCG-GGCGGGCCCGGCGg- -3'
miRNA:   3'- -ACC-UCGa----CGCgCCGCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 132158 0.74 0.198545
Target:  5'- cGGcgcgcAGCUGCGCGGCcGGCaCCGGCGc- -3'
miRNA:   3'- aCC-----UCGACGCGCCGcUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 98209 0.74 0.193819
Target:  5'- cGGGGUcgagUGCGCGGCGGcGCCCGcGCGc- -3'
miRNA:   3'- aCCUCG----ACGCGCCGCU-CGGGU-CGCac -5'
29600 5' -63.1 NC_006151.1 + 4991 0.73 0.223702
Target:  5'- gUGGAGCggcgcuuccUGCGCGG-GGGCCgGGCGg- -3'
miRNA:   3'- -ACCUCG---------ACGCGCCgCUCGGgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 21409 0.73 0.203371
Target:  5'- aGGGGCgGUGCGGCGucucgGGCCUcgggggucgcGGCGUGg -3'
miRNA:   3'- aCCUCGaCGCGCCGC-----UCGGG----------UCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 99549 0.72 0.240063
Target:  5'- cGGAGCacguggGCGCGGCGcGCgCGGCGcUGc -3'
miRNA:   3'- aCCUCGa-----CGCGCCGCuCGgGUCGC-AC- -5'
29600 5' -63.1 NC_006151.1 + 123059 0.72 0.25741
Target:  5'- cGGcGCUGCGCGacgcCGAGCgCCGGCGg- -3'
miRNA:   3'- aCCuCGACGCGCc---GCUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 61775 0.72 0.24977
Target:  5'- gUGGuGCUgcgGCGCgaggccggccggcuGGCGuuccAGCCCAGCGUGg -3'
miRNA:   3'- -ACCuCGA---CGCG--------------CCGC----UCGGGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 14051 0.72 0.245734
Target:  5'- cGGGGCgauaaaggggUGCGUGGCG-GCCCGGCc-- -3'
miRNA:   3'- aCCUCG----------ACGCGCCGCuCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 65338 0.71 0.295162
Target:  5'- -cGAGC-GCGCGGcCGAGCUCGGUGa- -3'
miRNA:   3'- acCUCGaCGCGCC-GCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 24240 0.71 0.301858
Target:  5'- --cGGCUG-GCGGUGGGuCCCGGCGUa -3'
miRNA:   3'- accUCGACgCGCCGCUC-GGGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 123112 0.71 0.288582
Target:  5'- cGGcGCUcgGCGGCGAGCCUGGCGc- -3'
miRNA:   3'- aCCuCGAcgCGCCGCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 71789 0.71 0.301183
Target:  5'- gGGGGCUGcCGCaccagcuGGcCGAGCUCGcGCGUGg -3'
miRNA:   3'- aCCUCGAC-GCG-------CC-GCUCGGGU-CGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.