miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 656 0.68 0.441996
Target:  5'- cGGGGCgcgGcCGgGGCGGGCUCcGCGg- -3'
miRNA:   3'- aCCUCGa--C-GCgCCGCUCGGGuCGCac -5'
29600 5' -63.1 NC_006151.1 + 2287 0.7 0.322645
Target:  5'- cGGGGCgcccGCgGCGGCGAcggcGCCCGGgGUc -3'
miRNA:   3'- aCCUCGa---CG-CGCCGCU----CGGGUCgCAc -5'
29600 5' -63.1 NC_006151.1 + 2400 0.7 0.315599
Target:  5'- cGGGGCcGCGgagcuCGGCGAGgcCCCGGCGg- -3'
miRNA:   3'- aCCUCGaCGC-----GCCGCUC--GGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 2783 0.68 0.416157
Target:  5'- cGGAGCU-CGCGGCacccGGgCCAGCGc- -3'
miRNA:   3'- aCCUCGAcGCGCCGc---UCgGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 3026 0.67 0.496246
Target:  5'- cGGGGCgcccgguccaGUucccggcccagGCGuGCGAGUCCGGCGUGc -3'
miRNA:   3'- aCCUCGa---------CG-----------CGC-CGCUCGGGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 3141 0.7 0.344481
Target:  5'- cGGGGC-GCccuCGGCGGGCUCGGCGc- -3'
miRNA:   3'- aCCUCGaCGc--GCCGCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 3256 0.68 0.441996
Target:  5'- cGGAGCgggGCGCcGCGGcGCgCGGCGa- -3'
miRNA:   3'- aCCUCGa--CGCGcCGCU-CGgGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 3965 0.71 0.282119
Target:  5'- cGG-GCcGCGCGGCG-GCCuCGGCGa- -3'
miRNA:   3'- aCCuCGaCGCGCCGCuCGG-GUCGCac -5'
29600 5' -63.1 NC_006151.1 + 4010 0.66 0.553303
Target:  5'- cGGGGCgaagaggGcCGCGGCGuaGGUCCAGgCGg- -3'
miRNA:   3'- aCCUCGa------C-GCGCCGC--UCGGGUC-GCac -5'
29600 5' -63.1 NC_006151.1 + 4330 0.69 0.367361
Target:  5'- cGG-GCUGCGCGGCG-GCgaaGGCGg- -3'
miRNA:   3'- aCCuCGACGCGCCGCuCGgg-UCGCac -5'
29600 5' -63.1 NC_006151.1 + 4398 0.66 0.534028
Target:  5'- cGGGGgUcCGCGGCGcGGCCCGG-GUa -3'
miRNA:   3'- aCCUCgAcGCGCCGC-UCGGGUCgCAc -5'
29600 5' -63.1 NC_006151.1 + 4991 0.73 0.223702
Target:  5'- gUGGAGCggcgcuuccUGCGCGG-GGGCCgGGCGg- -3'
miRNA:   3'- -ACCUCG---------ACGCGCCgCUCGGgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 5086 0.75 0.155564
Target:  5'- cGGGGC--CGCGGCGGGCgCCGGCGg- -3'
miRNA:   3'- aCCUCGacGCGCCGCUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 5236 0.68 0.424668
Target:  5'- -cGAGCgccGCGCGGCGgcggcgggGGCCCGGgGg- -3'
miRNA:   3'- acCUCGa--CGCGCCGC--------UCGGGUCgCac -5'
29600 5' -63.1 NC_006151.1 + 5318 0.68 0.449924
Target:  5'- cUGGAGCUGCugaagccgcggccGCGGCGGagggcGCCCucuccGGCGc- -3'
miRNA:   3'- -ACCUCGACG-------------CGCCGCU-----CGGG-----UCGCac -5'
29600 5' -63.1 NC_006151.1 + 6224 0.66 0.543637
Target:  5'- cGGAGgaGcCGCGGCGccgggAGCCCuGGCu-- -3'
miRNA:   3'- aCCUCgaC-GCGCCGC-----UCGGG-UCGcac -5'
29600 5' -63.1 NC_006151.1 + 10464 0.66 0.553303
Target:  5'- aGGAcGCgGCgGCGGUGAaggaggagagccGCCCGGCGc- -3'
miRNA:   3'- aCCU-CGaCG-CGCCGCU------------CGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 10561 0.68 0.441996
Target:  5'- cGGcGCccaaugGCGCGGCcGGCUCGGCGg- -3'
miRNA:   3'- aCCuCGa-----CGCGCCGcUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 10900 0.66 0.534028
Target:  5'- gGGGGUgccgGCGCGGaccgggguCGGGCCCAcgGCGc- -3'
miRNA:   3'- aCCUCGa---CGCGCC--------GCUCGGGU--CGCac -5'
29600 5' -63.1 NC_006151.1 + 14051 0.72 0.245734
Target:  5'- cGGGGCgauaaaggggUGCGUGGCG-GCCCGGCc-- -3'
miRNA:   3'- aCCUCG----------ACGCGCCGCuCGGGUCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.