miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 15033 0.67 0.459718
Target:  5'- aGGAGgUGCGCGuccacggcgcGCGGGgcCCCGGCGc- -3'
miRNA:   3'- aCCUCgACGCGC----------CGCUC--GGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 17400 0.68 0.407752
Target:  5'- cGGGGC-GCGUGGCGcgcggcagcaGGgCCAGCGa- -3'
miRNA:   3'- aCCUCGaCGCGCCGC----------UCgGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 19127 0.75 0.147679
Target:  5'- gGGGGC-GCGCGcGCGuaguaccAGUCCAGCGUGg -3'
miRNA:   3'- aCCUCGaCGCGC-CGC-------UCGGGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 19268 0.68 0.44112
Target:  5'- cGGGGCUcguggcGCGCGGggcccacCGGGgCCAGCGg- -3'
miRNA:   3'- aCCUCGA------CGCGCC-------GCUCgGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 19504 0.66 0.524479
Target:  5'- cGGGGCcucgggGaCGCaGGCGcGGCCCAGCa-- -3'
miRNA:   3'- aCCUCGa-----C-GCG-CCGC-UCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 19907 0.77 0.12241
Target:  5'- aGGAGCUGCGCGGCGcgcagcagaaagGGCcgcauggucucaaccCCGGUGUGu -3'
miRNA:   3'- aCCUCGACGCGCCGC------------UCG---------------GGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 20127 0.75 0.163427
Target:  5'- cGGGGCUGgGgGGCGGGCgCCGcgggggcggcGCGUGg -3'
miRNA:   3'- aCCUCGACgCgCCGCUCG-GGU----------CGCAC- -5'
29600 5' -63.1 NC_006151.1 + 20519 0.66 0.563019
Target:  5'- gGGGGCgGCGUGGUGAaCaCGGCGUc -3'
miRNA:   3'- aCCUCGaCGCGCCGCUcGgGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 21097 0.66 0.534028
Target:  5'- aGGAGCccCGCGGgGAGCCgGGUc-- -3'
miRNA:   3'- aCCUCGacGCGCCgCUCGGgUCGcac -5'
29600 5' -63.1 NC_006151.1 + 21409 0.73 0.203371
Target:  5'- aGGGGCgGUGCGGCGucucgGGCCUcgggggucgcGGCGUGg -3'
miRNA:   3'- aCCUCGaCGCGCCGC-----UCGGG----------UCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 21552 0.67 0.459718
Target:  5'- cGGGGcCUGgGCcucGGCGAGCCCGcCGa- -3'
miRNA:   3'- aCCUC-GACgCG---CCGCUCGGGUcGCac -5'
29600 5' -63.1 NC_006151.1 + 23045 0.7 0.337086
Target:  5'- aGcGGGCgGcCGCGGCGAGCCCA-CGa- -3'
miRNA:   3'- aC-CUCGaC-GCGCCGCUCGGGUcGCac -5'
29600 5' -63.1 NC_006151.1 + 24240 0.71 0.301858
Target:  5'- --cGGCUG-GCGGUGGGuCCCGGCGUa -3'
miRNA:   3'- accUCGACgCGCCGCUC-GGGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 26350 0.66 0.553303
Target:  5'- cGGGGCg--GCGGCGGGCC--GCGUc -3'
miRNA:   3'- aCCUCGacgCGCCGCUCGGguCGCAc -5'
29600 5' -63.1 NC_006151.1 + 27044 0.67 0.459718
Target:  5'- aGGGGCgcugGCGCGuGU-AGCCCauGGCGUa -3'
miRNA:   3'- aCCUCGa---CGCGC-CGcUCGGG--UCGCAc -5'
29600 5' -63.1 NC_006151.1 + 30239 0.66 0.534028
Target:  5'- cGGGGUUGCGcCGGCGGGagagacgaCgGGCGc- -3'
miRNA:   3'- aCCUCGACGC-GCCGCUCg-------GgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 30902 0.67 0.459718
Target:  5'- cGGAGC-GCGCGGUagcGCCCgcgGGCGg- -3'
miRNA:   3'- aCCUCGaCGCGCCGcu-CGGG---UCGCac -5'
29600 5' -63.1 NC_006151.1 + 33216 0.69 0.375216
Target:  5'- cGGAGCacGCGgGGCGc-CCCGGCGg- -3'
miRNA:   3'- aCCUCGa-CGCgCCGCucGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 34004 0.66 0.57278
Target:  5'- aGGGGCgucccgGCGCGcCG-GCCCGGCc-- -3'
miRNA:   3'- aCCUCGa-----CGCGCcGCuCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 39346 0.68 0.407752
Target:  5'- cGGcGCgGCGCGGCGccGGCUCAuCGUGc -3'
miRNA:   3'- aCCuCGaCGCGCCGC--UCGGGUcGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.