miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 130724 0.68 0.416157
Target:  5'- gGGGGCccGCGCGGCcgcGGCgCAGCGc- -3'
miRNA:   3'- aCCUCGa-CGCGCCGc--UCGgGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 130242 0.67 0.505584
Target:  5'- gGGAGCcgcagaagGCGCGGaaGAGgCCGGCGc- -3'
miRNA:   3'- aCCUCGa-------CGCGCCg-CUCgGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 129825 0.83 0.044198
Target:  5'- cGGAGC-GCGCGGCGgcguAGCCCAGCGa- -3'
miRNA:   3'- aCCUCGaCGCGCCGC----UCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 127924 0.67 0.486987
Target:  5'- gGGAGCggGgGCGGCGAGaCgGGCa-- -3'
miRNA:   3'- aCCUCGa-CgCGCCGCUCgGgUCGcac -5'
29600 5' -63.1 NC_006151.1 + 126361 0.67 0.514996
Target:  5'- aGGAGCacaagGCGCGcaagaagaacaGCGGGCCC-GCGcUGc -3'
miRNA:   3'- aCCUCGa----CGCGC-----------CGCUCGGGuCGC-AC- -5'
29600 5' -63.1 NC_006151.1 + 125542 0.7 0.34003
Target:  5'- gUGGAGgUGCGCGGCGgcguguacgugcAgaacuccaugcgcguGCCCGGCGa- -3'
miRNA:   3'- -ACCUCgACGCGCCGC------------U---------------CGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 123112 0.71 0.288582
Target:  5'- cGGcGCUcgGCGGCGAGCCUGGCGc- -3'
miRNA:   3'- aCCuCGAcgCGCCGCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 123059 0.72 0.25741
Target:  5'- cGGcGCUGCGCGacgcCGAGCgCCGGCGg- -3'
miRNA:   3'- aCCuCGACGCGCc---GCUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 122983 0.67 0.468719
Target:  5'- gGGGGCgucgGCGaCGaagaCGGGCCCGGCGc- -3'
miRNA:   3'- aCCUCGa---CGC-GCc---GCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 122785 0.69 0.375216
Target:  5'- gUGGgcGGCUGCGCGGCcucGCCCgacgAGCGc- -3'
miRNA:   3'- -ACC--UCGACGCGCCGcu-CGGG----UCGCac -5'
29600 5' -63.1 NC_006151.1 + 122699 0.68 0.450809
Target:  5'- gUGGAGCUcgcgcucuucGgGCGGCG-GCCCgAGCa-- -3'
miRNA:   3'- -ACCUCGA----------CgCGCCGCuCGGG-UCGcac -5'
29600 5' -63.1 NC_006151.1 + 122657 0.66 0.57278
Target:  5'- cUGGAGCgGCGCGaGCGccgcGCCgAG-GUGc -3'
miRNA:   3'- -ACCUCGaCGCGC-CGCu---CGGgUCgCAC- -5'
29600 5' -63.1 NC_006151.1 + 122238 0.69 0.394526
Target:  5'- aGGAGCUGUGCgugacggccaaccagGGCGAGgCCAcGCa-- -3'
miRNA:   3'- aCCUCGACGCG---------------CCGCUCgGGU-CGcac -5'
29600 5' -63.1 NC_006151.1 + 122196 0.68 0.407752
Target:  5'- cGGAGCUGUacgaccCGGCGcAGCCguGCGc- -3'
miRNA:   3'- aCCUCGACGc-----GCCGC-UCGGguCGCac -5'
29600 5' -63.1 NC_006151.1 + 121570 0.66 0.524479
Target:  5'- aGGGGacggGCGCGG-GuGCCCGGCuGUa -3'
miRNA:   3'- aCCUCga--CGCGCCgCuCGGGUCG-CAc -5'
29600 5' -63.1 NC_006151.1 + 120278 0.67 0.496246
Target:  5'- gGGAGCUGCGUGucaaGAGCCgGGUc-- -3'
miRNA:   3'- aCCUCGACGCGCcg--CUCGGgUCGcac -5'
29600 5' -63.1 NC_006151.1 + 119113 0.67 0.496246
Target:  5'- cGuGAGCcGCGCGGCcGGCCUcgugggGGCGcUGg -3'
miRNA:   3'- aC-CUCGaCGCGCCGcUCGGG------UCGC-AC- -5'
29600 5' -63.1 NC_006151.1 + 118438 0.69 0.399453
Target:  5'- cGGAGgUGUGCGcGCG-GCUCGGCcUGg -3'
miRNA:   3'- aCCUCgACGCGC-CGCuCGGGUCGcAC- -5'
29600 5' -63.1 NC_006151.1 + 117617 0.67 0.486987
Target:  5'- cGuGGGCUcgcGCGCGaGCGuGCCCA-CGUGc -3'
miRNA:   3'- aC-CUCGA---CGCGC-CGCuCGGGUcGCAC- -5'
29600 5' -63.1 NC_006151.1 + 113696 0.67 0.514996
Target:  5'- aGGGGCgcgUGUGCGGgGAGCuguggaccCUGGCGUa -3'
miRNA:   3'- aCCUCG---ACGCGCCgCUCG--------GGUCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.