miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 71789 0.71 0.301183
Target:  5'- gGGGGCUGcCGCaccagcuGGcCGAGCUCGcGCGUGg -3'
miRNA:   3'- aCCUCGAC-GCG-------CC-GCUCGGGU-CGCAC- -5'
29600 5' -63.1 NC_006151.1 + 24240 0.71 0.301858
Target:  5'- --cGGCUG-GCGGUGGGuCCCGGCGUa -3'
miRNA:   3'- accUCGACgCGCCGCUC-GGGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 55048 0.71 0.301858
Target:  5'- gUGGAGaagaUGCuCGGCGAGgaCCCGGCGg- -3'
miRNA:   3'- -ACCUCg---ACGcGCCGCUC--GGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 2400 0.7 0.315599
Target:  5'- cGGGGCcGCGgagcuCGGCGAGgcCCCGGCGg- -3'
miRNA:   3'- aCCUCGaCGC-----GCCGCUC--GGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 66867 0.7 0.315599
Target:  5'- cGGGGCgGCGCgaagGGCGcGCCCGGCc-- -3'
miRNA:   3'- aCCUCGaCGCG----CCGCuCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 44578 0.7 0.315599
Target:  5'- aGGAgcuccGCUGCaGCGGCGGacGCaUCAGCGUGc -3'
miRNA:   3'- aCCU-----CGACG-CGCCGCU--CG-GGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 2287 0.7 0.322645
Target:  5'- cGGGGCgcccGCgGCGGCGAcggcGCCCGGgGUc -3'
miRNA:   3'- aCCUCGa---CG-CGCCGCU----CGGGUCgCAc -5'
29600 5' -63.1 NC_006151.1 + 59291 0.7 0.322645
Target:  5'- -cGAGCgcgGCGUGGCGcccgcGGCUCAGCGg- -3'
miRNA:   3'- acCUCGa--CGCGCCGC-----UCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 113041 0.7 0.322645
Target:  5'- gGGuGCUGCGCGGCG-GCggAGCGc- -3'
miRNA:   3'- aCCuCGACGCGCCGCuCGggUCGCac -5'
29600 5' -63.1 NC_006151.1 + 132418 0.7 0.329086
Target:  5'- cGGAGCUugcccucGuCGCGGCGcGCCUGcGCGUGc -3'
miRNA:   3'- aCCUCGA-------C-GCGCCGCuCGGGU-CGCAC- -5'
29600 5' -63.1 NC_006151.1 + 75126 0.7 0.329807
Target:  5'- cUGGucGGCgGCcgGCGGCGcGGCCCAGCGc- -3'
miRNA:   3'- -ACC--UCGaCG--CGCCGC-UCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 23045 0.7 0.337086
Target:  5'- aGcGGGCgGcCGCGGCGAGCCCA-CGa- -3'
miRNA:   3'- aC-CUCGaC-GCGCCGCUCGGGUcGCac -5'
29600 5' -63.1 NC_006151.1 + 125542 0.7 0.34003
Target:  5'- gUGGAGgUGCGCGGCGgcguguacgugcAgaacuccaugcgcguGCCCGGCGa- -3'
miRNA:   3'- -ACCUCgACGCGCCGC------------U---------------CGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 3141 0.7 0.344481
Target:  5'- cGGGGC-GCccuCGGCGGGCUCGGCGc- -3'
miRNA:   3'- aCCUCGaCGc--GCCGCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 71036 0.7 0.344481
Target:  5'- cGGAGCUGCGCGccGCGcGCgucgucgccgacCCGGcCGUGg -3'
miRNA:   3'- aCCUCGACGCGC--CGCuCG------------GGUC-GCAC- -5'
29600 5' -63.1 NC_006151.1 + 131728 0.7 0.351993
Target:  5'- gUGGuaGGCgGgGUGGCGGGCCCGGgCGa- -3'
miRNA:   3'- -ACC--UCGaCgCGCCGCUCGGGUC-GCac -5'
29600 5' -63.1 NC_006151.1 + 100429 0.7 0.351993
Target:  5'- gGGGcGCUGCGCGGCGugauGGCgCAGaCGa- -3'
miRNA:   3'- aCCU-CGACGCGCCGC----UCGgGUC-GCac -5'
29600 5' -63.1 NC_006151.1 + 135128 0.69 0.359619
Target:  5'- gGcGGGCUGgGCGGgGAcgggcagacccaGCCCGGCGg- -3'
miRNA:   3'- aC-CUCGACgCGCCgCU------------CGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 141643 0.69 0.359619
Target:  5'- cGcGGCgGCGCGGCgGGGCCCcGCGg- -3'
miRNA:   3'- aCcUCGaCGCGCCG-CUCGGGuCGCac -5'
29600 5' -63.1 NC_006151.1 + 4330 0.69 0.367361
Target:  5'- cGG-GCUGCGCGGCG-GCgaaGGCGg- -3'
miRNA:   3'- aCCuCGACGCGCCGCuCGgg-UCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.