miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 4330 0.69 0.367361
Target:  5'- cGG-GCUGCGCGGCG-GCgaaGGCGg- -3'
miRNA:   3'- aCCuCGACGCGCCGCuCGgg-UCGCac -5'
29600 5' -63.1 NC_006151.1 + 33216 0.69 0.375216
Target:  5'- cGGAGCacGCGgGGCGc-CCCGGCGg- -3'
miRNA:   3'- aCCUCGa-CGCgCCGCucGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 122785 0.69 0.375216
Target:  5'- gUGGgcGGCUGCGCGGCcucGCCCgacgAGCGc- -3'
miRNA:   3'- -ACC--UCGACGCGCCGcu-CGGG----UCGCac -5'
29600 5' -63.1 NC_006151.1 + 73052 0.69 0.383184
Target:  5'- gUGGGGgUGCGCGG--GGUCC-GCGUGg -3'
miRNA:   3'- -ACCUCgACGCGCCgcUCGGGuCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 101214 0.69 0.383184
Target:  5'- cGaGGGCcagGCGUGGacgGGGCCCGGCGg- -3'
miRNA:   3'- aC-CUCGa--CGCGCCg--CUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 90137 0.69 0.383184
Target:  5'- cGGGGCgguagUGCGCGuCGGGCCCgcuGGCGa- -3'
miRNA:   3'- aCCUCG-----ACGCGCcGCUCGGG---UCGCac -5'
29600 5' -63.1 NC_006151.1 + 104375 0.69 0.383184
Target:  5'- cGGAGCcGCucucGCGGCuGGCCCgcaucgccggcGGCGUGc -3'
miRNA:   3'- aCCUCGaCG----CGCCGcUCGGG-----------UCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 84403 0.69 0.391263
Target:  5'- gGGAGCggguggGCGCGGUGAuaaggcggcGCgCGGCGg- -3'
miRNA:   3'- aCCUCGa-----CGCGCCGCU---------CGgGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 141381 0.69 0.391263
Target:  5'- gGGGGCggGCcccgggcaaacaGCGGCGuGUCCGGCGa- -3'
miRNA:   3'- aCCUCGa-CG------------CGCCGCuCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 59417 0.69 0.391263
Target:  5'- -cGAGCaGCaGCGGCGccAGCUCGGCGUc -3'
miRNA:   3'- acCUCGaCG-CGCCGC--UCGGGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 55880 0.69 0.391263
Target:  5'- cGGcGCUGuCGCGGCGGacgugcGCCgGGCGa- -3'
miRNA:   3'- aCCuCGAC-GCGCCGCU------CGGgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 51948 0.69 0.391263
Target:  5'- cUGGucGCgcagcaccacGCGCGGCGuGUCCAGCGa- -3'
miRNA:   3'- -ACCu-CGa---------CGCGCCGCuCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 104165 0.69 0.391263
Target:  5'- cGGAGCUGCGCcccgccgccgaGcGCGcGCUCGGCGc- -3'
miRNA:   3'- aCCUCGACGCG-----------C-CGCuCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 112036 0.69 0.391263
Target:  5'- gGGAGCUGgGgcCGGCGGGCgggCGGCGg- -3'
miRNA:   3'- aCCUCGACgC--GCCGCUCGg--GUCGCac -5'
29600 5' -63.1 NC_006151.1 + 122238 0.69 0.394526
Target:  5'- aGGAGCUGUGCgugacggccaaccagGGCGAGgCCAcGCa-- -3'
miRNA:   3'- aCCUCGACGCG---------------CCGCUCgGGU-CGcac -5'
29600 5' -63.1 NC_006151.1 + 118438 0.69 0.399453
Target:  5'- cGGAGgUGUGCGcGCG-GCUCGGCcUGg -3'
miRNA:   3'- aCCUCgACGCGC-CGCuCGGGUCGcAC- -5'
29600 5' -63.1 NC_006151.1 + 74516 0.69 0.399453
Target:  5'- gGGGGCagcaGCGUGGCGuccGCCagcGCGUGg -3'
miRNA:   3'- aCCUCGa---CGCGCCGCu--CGGgu-CGCAC- -5'
29600 5' -63.1 NC_006151.1 + 40560 0.68 0.407752
Target:  5'- gUGGaAGCgGCgGCGGCG-GCCgCGGCGg- -3'
miRNA:   3'- -ACC-UCGaCG-CGCCGCuCGG-GUCGCac -5'
29600 5' -63.1 NC_006151.1 + 17400 0.68 0.407752
Target:  5'- cGGGGC-GCGUGGCGcgcggcagcaGGgCCAGCGa- -3'
miRNA:   3'- aCCUCGaCGCGCCGC----------UCgGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 62497 0.68 0.407752
Target:  5'- gUGGAcaagGCGCGGaCGAcgGCCCGGCGg- -3'
miRNA:   3'- -ACCUcga-CGCGCC-GCU--CGGGUCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.