miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 40560 0.68 0.407752
Target:  5'- gUGGaAGCgGCgGCGGCG-GCCgCGGCGg- -3'
miRNA:   3'- -ACC-UCGaCG-CGCCGCuCGG-GUCGCac -5'
29600 5' -63.1 NC_006151.1 + 41862 0.67 0.486987
Target:  5'- gGGGGggGgGgGGagGAGCCCGGCGUc -3'
miRNA:   3'- aCCUCgaCgCgCCg-CUCGGGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 44578 0.7 0.315599
Target:  5'- aGGAgcuccGCUGCaGCGGCGGacGCaUCAGCGUGc -3'
miRNA:   3'- aCCU-----CGACG-CGCCGCU--CG-GGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 46368 0.66 0.550398
Target:  5'- gUGGAuGCgGCGgaugcagaGGCGAGCCCcgaugagccaccagGGUGUGa -3'
miRNA:   3'- -ACCU-CGaCGCg-------CCGCUCGGG--------------UCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 51948 0.69 0.391263
Target:  5'- cUGGucGCgcagcaccacGCGCGGCGuGUCCAGCGa- -3'
miRNA:   3'- -ACCu-CGa---------CGCGCCGCuCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 52382 0.66 0.563019
Target:  5'- cGGGGCccgcggGgGCGGCGGGCgCCGccGCGc- -3'
miRNA:   3'- aCCUCGa-----CgCGCCGCUCG-GGU--CGCac -5'
29600 5' -63.1 NC_006151.1 + 54636 0.66 0.563019
Target:  5'- gGGGGaaGCgGCGGCgcGAGCgCuGCGUGg -3'
miRNA:   3'- aCCUCgaCG-CGCCG--CUCGgGuCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 55048 0.71 0.301858
Target:  5'- gUGGAGaagaUGCuCGGCGAGgaCCCGGCGg- -3'
miRNA:   3'- -ACCUCg---ACGcGCCGCUC--GGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 55880 0.69 0.391263
Target:  5'- cGGcGCUGuCGCGGCGGacgugcGCCgGGCGa- -3'
miRNA:   3'- aCCuCGAC-GCGCCGCU------CGGgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 57156 0.66 0.543637
Target:  5'- gGGGGCgaggGCGUcccccGGCGcGGCCCAGaagucgggguCGUGg -3'
miRNA:   3'- aCCUCGa---CGCG-----CCGC-UCGGGUC----------GCAC- -5'
29600 5' -63.1 NC_006151.1 + 58994 0.66 0.543637
Target:  5'- -cGAGCgagaGCGCGGC--GUCCAGCGg- -3'
miRNA:   3'- acCUCGa---CGCGCCGcuCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 59291 0.7 0.322645
Target:  5'- -cGAGCgcgGCGUGGCGcccgcGGCUCAGCGg- -3'
miRNA:   3'- acCUCGa--CGCGCCGC-----UCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 59366 0.67 0.505584
Target:  5'- cGGGGCgccGCGCGGCcgucgucgcGUCCAGCacGUGg -3'
miRNA:   3'- aCCUCGa--CGCGCCGcu-------CGGGUCG--CAC- -5'
29600 5' -63.1 NC_006151.1 + 59417 0.69 0.391263
Target:  5'- -cGAGCaGCaGCGGCGccAGCUCGGCGUc -3'
miRNA:   3'- acCUCGaCG-CGCCGC--UCGGGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 61775 0.72 0.24977
Target:  5'- gUGGuGCUgcgGCGCgaggccggccggcuGGCGuuccAGCCCAGCGUGg -3'
miRNA:   3'- -ACCuCGA---CGCG--------------CCGC----UCGGGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 62497 0.68 0.407752
Target:  5'- gUGGAcaagGCGCGGaCGAcgGCCCGGCGg- -3'
miRNA:   3'- -ACCUcga-CGCGCC-GCU--CGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 65338 0.71 0.295162
Target:  5'- -cGAGC-GCGCGGcCGAGCUCGGUGa- -3'
miRNA:   3'- acCUCGaCGCGCC-GCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 66788 0.67 0.496246
Target:  5'- cGGcGGCgGCgGCGGCgGGGCCCGGgGa- -3'
miRNA:   3'- aCC-UCGaCG-CGCCG-CUCGGGUCgCac -5'
29600 5' -63.1 NC_006151.1 + 66867 0.7 0.315599
Target:  5'- cGGGGCgGCGCgaagGGCGcGCCCGGCc-- -3'
miRNA:   3'- aCCUCGaCGCG----CCGCuCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 66936 0.68 0.441996
Target:  5'- gGGGGCgagggcaaagGCgGCGGCGGGCgCGGCa-- -3'
miRNA:   3'- aCCUCGa---------CG-CGCCGCUCGgGUCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.