miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 69978 0.66 0.57278
Target:  5'- cGGGcGCUGCaGCGGCGgcAGCgUCAGCa-- -3'
miRNA:   3'- aCCU-CGACG-CGCCGC--UCG-GGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 81499 0.66 0.57278
Target:  5'- cGGccgucGGCgagaGCGCGGCccgcguGAGCUCGGCGg- -3'
miRNA:   3'- aCC-----UCGa---CGCGCCG------CUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 122657 0.66 0.57278
Target:  5'- cUGGAGCgGCGCGaGCGccgcGCCgAG-GUGc -3'
miRNA:   3'- -ACCUCGaCGCGC-CGCu---CGGgUCgCAC- -5'
29600 5' -63.1 NC_006151.1 + 132041 0.66 0.57278
Target:  5'- cGGcGGC-GCGCGGC-AGCgCGGCGg- -3'
miRNA:   3'- aCC-UCGaCGCGCCGcUCGgGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 69594 0.66 0.57278
Target:  5'- -cGAGCUcggccGCGCGGCGca-CCAGCGa- -3'
miRNA:   3'- acCUCGA-----CGCGCCGCucgGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 20519 0.66 0.563019
Target:  5'- gGGGGCgGCGUGGUGAaCaCGGCGUc -3'
miRNA:   3'- aCCUCGaCGCGCCGCUcGgGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 133663 0.66 0.562045
Target:  5'- aGGcGCUGCcggcgcgGCGGCGcGCCCccgaGGCGg- -3'
miRNA:   3'- aCCuCGACG-------CGCCGCuCGGG----UCGCac -5'
29600 5' -63.1 NC_006151.1 + 6224 0.66 0.543637
Target:  5'- cGGAGgaGcCGCGGCGccgggAGCCCuGGCu-- -3'
miRNA:   3'- aCCUCgaC-GCGCCGC-----UCGGG-UCGcac -5'
29600 5' -63.1 NC_006151.1 + 58994 0.66 0.543637
Target:  5'- -cGAGCgagaGCGCGGC--GUCCAGCGg- -3'
miRNA:   3'- acCUCGa---CGCGCCGcuCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 113539 0.66 0.543637
Target:  5'- cUGGcGCugaUGCGCGccGCGGGCCCGcGCGc- -3'
miRNA:   3'- -ACCuCG---ACGCGC--CGCUCGGGU-CGCac -5'
29600 5' -63.1 NC_006151.1 + 135085 0.66 0.543637
Target:  5'- cGG-GCggGgGCGGCgGGGCCgGGCGg- -3'
miRNA:   3'- aCCuCGa-CgCGCCG-CUCGGgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 141535 0.66 0.543637
Target:  5'- cGGAcgugagcgagcuGCUGCGCGaGaGGGUCCGGCGc- -3'
miRNA:   3'- aCCU------------CGACGCGC-CgCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 100891 0.66 0.547497
Target:  5'- aGGuGCUGCGCcGCGGcgcgcgcgcGCCCgacgacgcgagcgcgGGCGUGc -3'
miRNA:   3'- aCCuCGACGCGcCGCU---------CGGG---------------UCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 46368 0.66 0.550398
Target:  5'- gUGGAuGCgGCGgaugcagaGGCGAGCCCcgaugagccaccagGGUGUGa -3'
miRNA:   3'- -ACCU-CGaCGCg-------CCGCUCGGG--------------UCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 10464 0.66 0.553303
Target:  5'- aGGAcGCgGCgGCGGUGAaggaggagagccGCCCGGCGc- -3'
miRNA:   3'- aCCU-CGaCG-CGCCGCU------------CGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 26350 0.66 0.553303
Target:  5'- cGGGGCg--GCGGCGGGCC--GCGUc -3'
miRNA:   3'- aCCUCGacgCGCCGCUCGGguCGCAc -5'
29600 5' -63.1 NC_006151.1 + 96032 0.66 0.553303
Target:  5'- cGGuGgUGCGCGGCaggGGGUUCAGCa-- -3'
miRNA:   3'- aCCuCgACGCGCCG---CUCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 4010 0.66 0.553303
Target:  5'- cGGGGCgaagaggGcCGCGGCGuaGGUCCAGgCGg- -3'
miRNA:   3'- aCCUCGa------C-GCGCCGC--UCGGGUC-GCac -5'
29600 5' -63.1 NC_006151.1 + 81362 0.66 0.553303
Target:  5'- cGGGGCcc--CGGCGGGCgCCAGCGc- -3'
miRNA:   3'- aCCUCGacgcGCCGCUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 107024 0.66 0.553303
Target:  5'- cGGcGCUGauCGCGGCGcGGCCCcuggccGGCGa- -3'
miRNA:   3'- aCCuCGAC--GCGCCGC-UCGGG------UCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.