miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 121570 0.66 0.524479
Target:  5'- aGGGGacggGCGCGG-GuGCCCGGCuGUa -3'
miRNA:   3'- aCCUCga--CGCGCCgCuCGGGUCG-CAc -5'
29600 5' -63.1 NC_006151.1 + 134073 0.66 0.524479
Target:  5'- cUGGuG-UGUGCGaGCGAGCCCGugacCGUGg -3'
miRNA:   3'- -ACCuCgACGCGC-CGCUCGGGUc---GCAC- -5'
29600 5' -63.1 NC_006151.1 + 137071 0.66 0.524479
Target:  5'- gUGGAGCUgGCGCaccGGCGccaGGCCUucGCGg- -3'
miRNA:   3'- -ACCUCGA-CGCG---CCGC---UCGGGu-CGCac -5'
29600 5' -63.1 NC_006151.1 + 137611 0.66 0.524479
Target:  5'- gGGGGC-GCG-GGCGGGgacCCCGGCGc- -3'
miRNA:   3'- aCCUCGaCGCgCCGCUC---GGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 19504 0.66 0.524479
Target:  5'- cGGGGCcucgggGaCGCaGGCGcGGCCCAGCa-- -3'
miRNA:   3'- aCCUCGa-----C-GCG-CCGC-UCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 67842 0.66 0.524479
Target:  5'- gGGGGCUcagcaGCcCGGCGAGC-CGGCGc- -3'
miRNA:   3'- aCCUCGA-----CGcGCCGCUCGgGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 131110 0.66 0.524479
Target:  5'- gGGGGCccgGcCGCGGCGcgggaGGCCgCGGCGc- -3'
miRNA:   3'- aCCUCGa--C-GCGCCGC-----UCGG-GUCGCac -5'
29600 5' -63.1 NC_006151.1 + 136972 0.66 0.524479
Target:  5'- cUGGAGCUggccgccgcgccGgGCGGCGGGCgCGcGCGc- -3'
miRNA:   3'- -ACCUCGA------------CgCGCCGCUCGgGU-CGCac -5'
29600 5' -63.1 NC_006151.1 + 103770 0.66 0.524479
Target:  5'- cGGcGCUGCGCGaGUcgGAGCgCUGGCGg- -3'
miRNA:   3'- aCCuCGACGCGC-CG--CUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 113107 0.66 0.523528
Target:  5'- gGGGGCgggGcCGCGGacgcggacgccgcCGGGCCCGGCu-- -3'
miRNA:   3'- aCCUCGa--C-GCGCC-------------GCUCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 90417 0.66 0.523528
Target:  5'- gGcGAGgaGCGCGaCGAGCacgcccaUCAGCGUGa -3'
miRNA:   3'- aC-CUCgaCGCGCcGCUCG-------GGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 138118 0.67 0.518781
Target:  5'- cGGAcauGCUGCGCGGCcuggccguggacgcgGAGgaCCGGCGc- -3'
miRNA:   3'- aCCU---CGACGCGCCG---------------CUCg-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 113696 0.67 0.514996
Target:  5'- aGGGGCgcgUGUGCGGgGAGCuguggaccCUGGCGUa -3'
miRNA:   3'- aCCUCG---ACGCGCCgCUCG--------GGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 126361 0.67 0.514996
Target:  5'- aGGAGCacaagGCGCGcaagaagaacaGCGGGCCC-GCGcUGc -3'
miRNA:   3'- aCCUCGa----CGCGC-----------CGCUCGGGuCGC-AC- -5'
29600 5' -63.1 NC_006151.1 + 69330 0.67 0.514052
Target:  5'- cGGGcgcgucgccgcccGCgaGCGCGGCGuAGCCC-GCGUc -3'
miRNA:   3'- aCCU-------------CGa-CGCGCCGC-UCGGGuCGCAc -5'
29600 5' -63.1 NC_006151.1 + 59366 0.67 0.505584
Target:  5'- cGGGGCgccGCGCGGCcgucgucgcGUCCAGCacGUGg -3'
miRNA:   3'- aCCUCGa--CGCGCCGcu-------CGGGUCG--CAC- -5'
29600 5' -63.1 NC_006151.1 + 130242 0.67 0.505584
Target:  5'- gGGAGCcgcagaagGCGCGGaaGAGgCCGGCGc- -3'
miRNA:   3'- aCCUCGa-------CGCGCCg-CUCgGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 141747 0.67 0.505584
Target:  5'- aGGGGC-GCGgGGCGcgcGCCCcgguGGCGUc -3'
miRNA:   3'- aCCUCGaCGCgCCGCu--CGGG----UCGCAc -5'
29600 5' -63.1 NC_006151.1 + 66788 0.67 0.496246
Target:  5'- cGGcGGCgGCgGCGGCgGGGCCCGGgGa- -3'
miRNA:   3'- aCC-UCGaCG-CGCCG-CUCGGGUCgCac -5'
29600 5' -63.1 NC_006151.1 + 119113 0.67 0.496246
Target:  5'- cGuGAGCcGCGCGGCcGGCCUcgugggGGCGcUGg -3'
miRNA:   3'- aC-CUCGaCGCGCCGcUCGGG------UCGC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.