miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 81362 0.66 0.553303
Target:  5'- cGGGGCcc--CGGCGGGCgCCAGCGc- -3'
miRNA:   3'- aCCUCGacgcGCCGCUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 107024 0.66 0.553303
Target:  5'- cGGcGCUGauCGCGGCGcGGCCCcuggccGGCGa- -3'
miRNA:   3'- aCCuCGAC--GCGCCGC-UCGGG------UCGCac -5'
29600 5' -63.1 NC_006151.1 + 46368 0.66 0.550398
Target:  5'- gUGGAuGCgGCGgaugcagaGGCGAGCCCcgaugagccaccagGGUGUGa -3'
miRNA:   3'- -ACCU-CGaCGCg-------CCGCUCGGG--------------UCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 100891 0.66 0.547497
Target:  5'- aGGuGCUGCGCcGCGGcgcgcgcgcGCCCgacgacgcgagcgcgGGCGUGc -3'
miRNA:   3'- aCCuCGACGCGcCGCU---------CGGG---------------UCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 57156 0.66 0.543637
Target:  5'- gGGGGCgaggGCGUcccccGGCGcGGCCCAGaagucgggguCGUGg -3'
miRNA:   3'- aCCUCGa---CGCG-----CCGC-UCGGGUC----------GCAC- -5'
29600 5' -63.1 NC_006151.1 + 74560 0.66 0.543637
Target:  5'- cUGGGGCUGguUGCccaGCGGGUCCccgggcAGCGUGa -3'
miRNA:   3'- -ACCUCGAC--GCGc--CGCUCGGG------UCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 105022 0.66 0.543637
Target:  5'- aGGAGCUGgugacgcagGCGGCGcugcuGCUCGGCGc- -3'
miRNA:   3'- aCCUCGACg--------CGCCGCu----CGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 6224 0.66 0.543637
Target:  5'- cGGAGgaGcCGCGGCGccgggAGCCCuGGCu-- -3'
miRNA:   3'- aCCUCgaC-GCGCCGC-----UCGGG-UCGcac -5'
29600 5' -63.1 NC_006151.1 + 58994 0.66 0.543637
Target:  5'- -cGAGCgagaGCGCGGC--GUCCAGCGg- -3'
miRNA:   3'- acCUCGa---CGCGCCGcuCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 113539 0.66 0.543637
Target:  5'- cUGGcGCugaUGCGCGccGCGGGCCCGcGCGc- -3'
miRNA:   3'- -ACCuCG---ACGCGC--CGCUCGGGU-CGCac -5'
29600 5' -63.1 NC_006151.1 + 135085 0.66 0.543637
Target:  5'- cGG-GCggGgGCGGCgGGGCCgGGCGg- -3'
miRNA:   3'- aCCuCGa-CgCGCCG-CUCGGgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 141535 0.66 0.543637
Target:  5'- cGGAcgugagcgagcuGCUGCGCGaGaGGGUCCGGCGc- -3'
miRNA:   3'- aCCU------------CGACGCGC-CgCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 10900 0.66 0.534028
Target:  5'- gGGGGUgccgGCGCGGaccgggguCGGGCCCAcgGCGc- -3'
miRNA:   3'- aCCUCGa---CGCGCC--------GCUCGGGU--CGCac -5'
29600 5' -63.1 NC_006151.1 + 21097 0.66 0.534028
Target:  5'- aGGAGCccCGCGGgGAGCCgGGUc-- -3'
miRNA:   3'- aCCUCGacGCGCCgCUCGGgUCGcac -5'
29600 5' -63.1 NC_006151.1 + 68035 0.66 0.534028
Target:  5'- aGGcGGCccgccgGCGCGGCGggcacgGGCUCGGCGa- -3'
miRNA:   3'- aCC-UCGa-----CGCGCCGC------UCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 4398 0.66 0.534028
Target:  5'- cGGGGgUcCGCGGCGcGGCCCGG-GUa -3'
miRNA:   3'- aCCUCgAcGCGCCGC-UCGGGUCgCAc -5'
29600 5' -63.1 NC_006151.1 + 30239 0.66 0.534028
Target:  5'- cGGGGUUGCGcCGGCGGGagagacgaCgGGCGc- -3'
miRNA:   3'- aCCUCGACGC-GCCGCUCg-------GgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 82236 0.66 0.534028
Target:  5'- aGGAGCgcagcgcgacGCGCaGGcCGAggaaggccucGCCCAGCGUc -3'
miRNA:   3'- aCCUCGa---------CGCG-CC-GCU----------CGGGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 88062 0.66 0.534028
Target:  5'- gGGcAGCUGCGagGGCaGGCCCucgaGGCGg- -3'
miRNA:   3'- aCC-UCGACGCg-CCGcUCGGG----UCGCac -5'
29600 5' -63.1 NC_006151.1 + 136972 0.66 0.524479
Target:  5'- cUGGAGCUggccgccgcgccGgGCGGCGGGCgCGcGCGc- -3'
miRNA:   3'- -ACCUCGA------------CgCGCCGCUCGgGU-CGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.