miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 26350 0.66 0.553303
Target:  5'- cGGGGCg--GCGGCGGGCC--GCGUc -3'
miRNA:   3'- aCCUCGacgCGCCGCUCGGguCGCAc -5'
29600 5' -63.1 NC_006151.1 + 96032 0.66 0.553303
Target:  5'- cGGuGgUGCGCGGCaggGGGUUCAGCa-- -3'
miRNA:   3'- aCCuCgACGCGCCG---CUCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 92442 0.66 0.563993
Target:  5'- cUGGuGCUGCGCugccgcgacguccucGCGAGCCUGgGgGUGg -3'
miRNA:   3'- -ACCuCGACGCGc--------------CGCUCGGGU-CgCAC- -5'
29600 5' -63.1 NC_006151.1 + 141698 0.66 0.571802
Target:  5'- cGGcGGCUG-GCGGCGGacgcgguGCCCggGGCGUu -3'
miRNA:   3'- aCC-UCGACgCGCCGCU-------CGGG--UCGCAc -5'
29600 5' -63.1 NC_006151.1 + 34004 0.66 0.57278
Target:  5'- aGGGGCgucccgGCGCGcCG-GCCCGGCc-- -3'
miRNA:   3'- aCCUCGa-----CGCGCcGCuCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 69978 0.66 0.57278
Target:  5'- cGGGcGCUGCaGCGGCGgcAGCgUCAGCa-- -3'
miRNA:   3'- aCCU-CGACG-CGCCGC--UCG-GGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 81499 0.66 0.57278
Target:  5'- cGGccgucGGCgagaGCGCGGCccgcguGAGCUCGGCGg- -3'
miRNA:   3'- aCC-----UCGa---CGCGCCG------CUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 122657 0.66 0.57278
Target:  5'- cUGGAGCgGCGCGaGCGccgcGCCgAG-GUGc -3'
miRNA:   3'- -ACCUCGaCGCGC-CGCu---CGGgUCgCAC- -5'
29600 5' -63.1 NC_006151.1 + 132041 0.66 0.57278
Target:  5'- cGGcGGC-GCGCGGC-AGCgCGGCGg- -3'
miRNA:   3'- aCC-UCGaCGCGCCGcUCGgGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 69594 0.66 0.57278
Target:  5'- -cGAGCUcggccGCGCGGCGca-CCAGCGa- -3'
miRNA:   3'- acCUCGA-----CGCGCCGCucgGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 106680 0.66 0.563019
Target:  5'- cGGcGCUcgGCGCGcCGGGCgCCGGCGa- -3'
miRNA:   3'- aCCuCGA--CGCGCcGCUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 133388 0.66 0.563019
Target:  5'- cGGGGCg--GCGGCcgGGGCCgAGCGg- -3'
miRNA:   3'- aCCUCGacgCGCCG--CUCGGgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 4010 0.66 0.553303
Target:  5'- cGGGGCgaagaggGcCGCGGCGuaGGUCCAGgCGg- -3'
miRNA:   3'- aCCUCGa------C-GCGCCGC--UCGGGUC-GCac -5'
29600 5' -63.1 NC_006151.1 + 81362 0.66 0.553303
Target:  5'- cGGGGCcc--CGGCGGGCgCCAGCGc- -3'
miRNA:   3'- aCCUCGacgcGCCGCUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 107024 0.66 0.553303
Target:  5'- cGGcGCUGauCGCGGCGcGGCCCcuggccGGCGa- -3'
miRNA:   3'- aCCuCGAC--GCGCCGC-UCGGG------UCGCac -5'
29600 5' -63.1 NC_006151.1 + 133663 0.66 0.562045
Target:  5'- aGGcGCUGCcggcgcgGCGGCGcGCCCccgaGGCGg- -3'
miRNA:   3'- aCCuCGACG-------CGCCGCuCGGG----UCGCac -5'
29600 5' -63.1 NC_006151.1 + 20519 0.66 0.563019
Target:  5'- gGGGGCgGCGUGGUGAaCaCGGCGUc -3'
miRNA:   3'- aCCUCGaCGCGCCGCUcGgGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 52382 0.66 0.563019
Target:  5'- cGGGGCccgcggGgGCGGCGGGCgCCGccGCGc- -3'
miRNA:   3'- aCCUCGa-----CgCGCCGCUCG-GGU--CGCac -5'
29600 5' -63.1 NC_006151.1 + 54636 0.66 0.563019
Target:  5'- gGGGGaaGCgGCGGCgcGAGCgCuGCGUGg -3'
miRNA:   3'- aCCUCgaCG-CGCCG--CUCGgGuCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 74458 0.66 0.563019
Target:  5'- cGGcaGGC-GCuCGGCGAGCCCGucGCGg- -3'
miRNA:   3'- aCC--UCGaCGcGCCGCUCGGGU--CGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.