Results 61 - 80 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29600 | 5' | -63.1 | NC_006151.1 | + | 119113 | 0.67 | 0.496246 |
Target: 5'- cGuGAGCcGCGCGGCcGGCCUcgugggGGCGcUGg -3' miRNA: 3'- aC-CUCGaCGCGCCGcUCGGG------UCGC-AC- -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 3026 | 0.67 | 0.496246 |
Target: 5'- cGGGGCgcccgguccaGUucccggcccagGCGuGCGAGUCCGGCGUGc -3' miRNA: 3'- aCCUCGa---------CG-----------CGC-CGCUCGGGUCGCAC- -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 41862 | 0.67 | 0.486987 |
Target: 5'- gGGGGggGgGgGGagGAGCCCGGCGUc -3' miRNA: 3'- aCCUCgaCgCgCCg-CUCGGGUCGCAc -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 127924 | 0.67 | 0.486987 |
Target: 5'- gGGAGCggGgGCGGCGAGaCgGGCa-- -3' miRNA: 3'- aCCUCGa-CgCGCCGCUCgGgUCGcac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 91564 | 0.67 | 0.486987 |
Target: 5'- cGGGGCgauggcgGCGCGcGCGuGCuCCAG-GUGc -3' miRNA: 3'- aCCUCGa------CGCGC-CGCuCG-GGUCgCAC- -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 117617 | 0.67 | 0.486987 |
Target: 5'- cGuGGGCUcgcGCGCGaGCGuGCCCA-CGUGc -3' miRNA: 3'- aC-CUCGA---CGCGC-CGCuCGGGUcGCAC- -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 103385 | 0.67 | 0.475074 |
Target: 5'- aUGcGGCUGCGCgcgcugcugGGCGAcuuugccacgcuggGCCCGGCGgUGg -3' miRNA: 3'- -ACcUCGACGCG---------CCGCU--------------CGGGUCGC-AC- -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 112598 | 0.67 | 0.472345 |
Target: 5'- gUGGAggccgccgcggcgccGCUgGCGCuGGaCGAGCCCugccGCGUGu -3' miRNA: 3'- -ACCU---------------CGA-CGCG-CC-GCUCGGGu---CGCAC- -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 122983 | 0.67 | 0.468719 |
Target: 5'- gGGGGCgucgGCGaCGaagaCGGGCCCGGCGc- -3' miRNA: 3'- aCCUCGa---CGC-GCc---GCUCGGGUCGCac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 102546 | 0.67 | 0.468719 |
Target: 5'- gUGGuGGC-GCGCGcGCGGGCCCuguuuGCGc- -3' miRNA: 3'- -ACC-UCGaCGCGC-CGCUCGGGu----CGCac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 27044 | 0.67 | 0.459718 |
Target: 5'- aGGGGCgcugGCGCGuGU-AGCCCauGGCGUa -3' miRNA: 3'- aCCUCGa---CGCGC-CGcUCGGG--UCGCAc -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 15033 | 0.67 | 0.459718 |
Target: 5'- aGGAGgUGCGCGuccacggcgcGCGGGgcCCCGGCGc- -3' miRNA: 3'- aCCUCgACGCGC----------CGCUC--GGGUCGCac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 21552 | 0.67 | 0.459718 |
Target: 5'- cGGGGcCUGgGCcucGGCGAGCCCGcCGa- -3' miRNA: 3'- aCCUC-GACgCG---CCGCUCGGGUcGCac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 30902 | 0.67 | 0.459718 |
Target: 5'- cGGAGC-GCGCGGUagcGCCCgcgGGCGg- -3' miRNA: 3'- aCCUCGaCGCGCCGcu-CGGG---UCGCac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 122699 | 0.68 | 0.450809 |
Target: 5'- gUGGAGCUcgcgcucuucGgGCGGCG-GCCCgAGCa-- -3' miRNA: 3'- -ACCUCGA----------CgCGCCGCuCGGG-UCGcac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 113428 | 0.68 | 0.450809 |
Target: 5'- cUGGcGCUgcgccgcuuccgGCGCGGCGuGCUCAGCu-- -3' miRNA: 3'- -ACCuCGA------------CGCGCCGCuCGGGUCGcac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 85320 | 0.68 | 0.450809 |
Target: 5'- cGGGcGCUacGCGCuGGaGGGCCaCAGCGUGc -3' miRNA: 3'- aCCU-CGA--CGCG-CCgCUCGG-GUCGCAC- -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 5318 | 0.68 | 0.449924 |
Target: 5'- cUGGAGCUGCugaagccgcggccGCGGCGGagggcGCCCucuccGGCGc- -3' miRNA: 3'- -ACCUCGACG-------------CGCCGCU-----CGGG-----UCGCac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 96807 | 0.68 | 0.44551 |
Target: 5'- cGGGGCgcgcggGCuuuuaGCGGCGGGCCCgccaaugggggaaagGGCGg- -3' miRNA: 3'- aCCUCGa-----CG-----CGCCGCUCGGG---------------UCGCac -5' |
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29600 | 5' | -63.1 | NC_006151.1 | + | 10561 | 0.68 | 0.441996 |
Target: 5'- cGGcGCccaaugGCGCGGCcGGCUCGGCGg- -3' miRNA: 3'- aCCuCGa-----CGCGCCGcUCGGGUCGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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