miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 141747 0.67 0.505584
Target:  5'- aGGGGC-GCGgGGCGcgcGCCCcgguGGCGUc -3'
miRNA:   3'- aCCUCGaCGCgCCGCu--CGGG----UCGCAc -5'
29600 5' -63.1 NC_006151.1 + 141698 0.66 0.571802
Target:  5'- cGGcGGCUG-GCGGCGGacgcgguGCCCggGGCGUu -3'
miRNA:   3'- aCC-UCGACgCGCCGCU-------CGGG--UCGCAc -5'
29600 5' -63.1 NC_006151.1 + 141643 0.69 0.359619
Target:  5'- cGcGGCgGCGCGGCgGGGCCCcGCGg- -3'
miRNA:   3'- aCcUCGaCGCGCCG-CUCGGGuCGCac -5'
29600 5' -63.1 NC_006151.1 + 141535 0.66 0.543637
Target:  5'- cGGAcgugagcgagcuGCUGCGCGaGaGGGUCCGGCGc- -3'
miRNA:   3'- aCCU------------CGACGCGC-CgCUCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 141381 0.69 0.391263
Target:  5'- gGGGGCggGCcccgggcaaacaGCGGCGuGUCCGGCGa- -3'
miRNA:   3'- aCCUCGa-CG------------CGCCGCuCGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 138118 0.67 0.518781
Target:  5'- cGGAcauGCUGCGCGGCcuggccguggacgcgGAGgaCCGGCGc- -3'
miRNA:   3'- aCCU---CGACGCGCCG---------------CUCg-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 137611 0.66 0.524479
Target:  5'- gGGGGC-GCG-GGCGGGgacCCCGGCGc- -3'
miRNA:   3'- aCCUCGaCGCgCCGCUC---GGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 137071 0.66 0.524479
Target:  5'- gUGGAGCUgGCGCaccGGCGccaGGCCUucGCGg- -3'
miRNA:   3'- -ACCUCGA-CGCG---CCGC---UCGGGu-CGCac -5'
29600 5' -63.1 NC_006151.1 + 136972 0.66 0.524479
Target:  5'- cUGGAGCUggccgccgcgccGgGCGGCGGGCgCGcGCGc- -3'
miRNA:   3'- -ACCUCGA------------CgCGCCGCUCGgGU-CGCac -5'
29600 5' -63.1 NC_006151.1 + 135128 0.69 0.359619
Target:  5'- gGcGGGCUGgGCGGgGAcgggcagacccaGCCCGGCGg- -3'
miRNA:   3'- aC-CUCGACgCGCCgCU------------CGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 135085 0.66 0.543637
Target:  5'- cGG-GCggGgGCGGCgGGGCCgGGCGg- -3'
miRNA:   3'- aCCuCGa-CgCGCCG-CUCGGgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 134073 0.66 0.524479
Target:  5'- cUGGuG-UGUGCGaGCGAGCCCGugacCGUGg -3'
miRNA:   3'- -ACCuCgACGCGC-CGCUCGGGUc---GCAC- -5'
29600 5' -63.1 NC_006151.1 + 134009 0.71 0.300509
Target:  5'- gGGGGCcaccagcgcgcagaGCGCGGCGAcgagcgucagcgagaGCCCGGCGg- -3'
miRNA:   3'- aCCUCGa-------------CGCGCCGCU---------------CGGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 133663 0.66 0.562045
Target:  5'- aGGcGCUGCcggcgcgGCGGCGcGCCCccgaGGCGg- -3'
miRNA:   3'- aCCuCGACG-------CGCCGCuCGGG----UCGCac -5'
29600 5' -63.1 NC_006151.1 + 133388 0.66 0.563019
Target:  5'- cGGGGCg--GCGGCcgGGGCCgAGCGg- -3'
miRNA:   3'- aCCUCGacgCGCCG--CUCGGgUCGCac -5'
29600 5' -63.1 NC_006151.1 + 132418 0.7 0.329086
Target:  5'- cGGAGCUugcccucGuCGCGGCGcGCCUGcGCGUGc -3'
miRNA:   3'- aCCUCGA-------C-GCGCCGCuCGGGU-CGCAC- -5'
29600 5' -63.1 NC_006151.1 + 132158 0.74 0.198545
Target:  5'- cGGcgcgcAGCUGCGCGGCcGGCaCCGGCGc- -3'
miRNA:   3'- aCC-----UCGACGCGCCGcUCG-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 132041 0.66 0.57278
Target:  5'- cGGcGGC-GCGCGGC-AGCgCGGCGg- -3'
miRNA:   3'- aCC-UCGaCGCGCCGcUCGgGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 131728 0.7 0.351993
Target:  5'- gUGGuaGGCgGgGUGGCGGGCCCGGgCGa- -3'
miRNA:   3'- -ACC--UCGaCgCGCCGCUCGGGUC-GCac -5'
29600 5' -63.1 NC_006151.1 + 131110 0.66 0.524479
Target:  5'- gGGGGCccgGcCGCGGCGcgggaGGCCgCGGCGc- -3'
miRNA:   3'- aCCUCGa--C-GCGCCGC-----UCGG-GUCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.