miRNA display CGI


Results 81 - 100 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 3873 0.67 0.406966
Target:  5'- gGCGCCc--GCCGccGCcgGCGCCgGCGCUg -3'
miRNA:   3'- gCGCGGuacCGGC--CGa-CGCGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 20306 0.67 0.406966
Target:  5'- gCGCccGCCGUGGCguuggCGGCgGCGagcaggaCGCGCg -3'
miRNA:   3'- -GCG--CGGUACCG-----GCCGaCGCg------GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 92425 0.67 0.406966
Target:  5'- uCGCGcCCGUGuucccGCUGGUgcUGCGCUGcCGCg -3'
miRNA:   3'- -GCGC-GGUAC-----CGGCCG--ACGCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 31686 0.67 0.406966
Target:  5'- cCGgGCCGccGaGCCGGCcGCGCCauuggGCGCc -3'
miRNA:   3'- -GCgCGGUa-C-CGGCCGaCGCGG-----CGCGa -5'
29602 3' -65.7 NC_006151.1 + 39967 0.67 0.406966
Target:  5'- gGCGCCGUcGCCGccGCggGCGCCcCGCc -3'
miRNA:   3'- gCGCGGUAcCGGC--CGa-CGCGGcGCGa -5'
29602 3' -65.7 NC_006151.1 + 57871 0.67 0.406966
Target:  5'- gCGCGCCcc-GCCGGCaGaCGUCGCaGCg -3'
miRNA:   3'- -GCGCGGuacCGGCCGaC-GCGGCG-CGa -5'
29602 3' -65.7 NC_006151.1 + 64516 0.67 0.406966
Target:  5'- gCGCGCCGccaaaGGCC-GCcGCgGCCGCGUc -3'
miRNA:   3'- -GCGCGGUa----CCGGcCGaCG-CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 118036 0.67 0.406148
Target:  5'- cCGCGgccaagaCCGUGaCCGuGC-GCGCCGCGCc -3'
miRNA:   3'- -GCGC-------GGUACcGGC-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 129340 0.67 0.406148
Target:  5'- gGCcCCGgggcGGCCGGC-GCGCCgauaaauGCGCUc -3'
miRNA:   3'- gCGcGGUa---CCGGCCGaCGCGG-------CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 98832 0.67 0.403702
Target:  5'- uGCGCCAgaugcagaacgagGGCCugaagccGCUGaCGCgCGCGCUc -3'
miRNA:   3'- gCGCGGUa------------CCGGc------CGAC-GCG-GCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 85903 0.67 0.402076
Target:  5'- aCGaCGCCGUGGCCGuGCaguacgaggaggggcUGgGCCuGCuGCUg -3'
miRNA:   3'- -GC-GCGGUACCGGC-CG---------------ACgCGG-CG-CGA- -5'
29602 3' -65.7 NC_006151.1 + 58241 0.67 0.398837
Target:  5'- gCGCGCCGccacGcGCCGGCccgcGgGCCGCaGCa -3'
miRNA:   3'- -GCGCGGUa---C-CGGCCGa---CgCGGCG-CGa -5'
29602 3' -65.7 NC_006151.1 + 58722 0.67 0.398837
Target:  5'- aGCGCCcccGuGCC-GCUcGCGUCGCGCa -3'
miRNA:   3'- gCGCGGua-C-CGGcCGA-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 96313 0.67 0.398837
Target:  5'- aGCGCCGacugcaGGCCGcGCgcguagaGCGCCGgGUa -3'
miRNA:   3'- gCGCGGUa-----CCGGC-CGa------CGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 103891 0.67 0.398837
Target:  5'- gCGCGCCAccUGGCgcuggaGGUgGCGC-GCGCg -3'
miRNA:   3'- -GCGCGGU--ACCGg-----CCGaCGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 3246 0.67 0.398837
Target:  5'- gGCGCgGcGGCgGaGCgggGCGCCGCGg- -3'
miRNA:   3'- gCGCGgUaCCGgC-CGa--CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 86730 0.67 0.398837
Target:  5'- gCGCGCCGccgcgaGGCCGGCgUGCGCgGacacaccuaccUGCa -3'
miRNA:   3'- -GCGCGGUa-----CCGGCCG-ACGCGgC-----------GCGa -5'
29602 3' -65.7 NC_006151.1 + 89703 0.67 0.398837
Target:  5'- cCGCGuCCA-GGaacCCGGCgGCGCCGgcCGCg -3'
miRNA:   3'- -GCGC-GGUaCC---GGCCGaCGCGGC--GCGa -5'
29602 3' -65.7 NC_006151.1 + 98356 0.67 0.398837
Target:  5'- cCGCgGgCGUGcGCgGGCUcuggGCGCgCGCGCUg -3'
miRNA:   3'- -GCG-CgGUAC-CGgCCGA----CGCG-GCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 46541 0.67 0.398837
Target:  5'- cCGCGgacgaCCAgaGGCCGGCgcccagGCGCucccCGCGCa -3'
miRNA:   3'- -GCGC-----GGUa-CCGGCCGa-----CGCG----GCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.