miRNA display CGI


Results 61 - 80 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 40035 0.74 0.143696
Target:  5'- cCGCGCCGccGCCGGggGCGCCGUGg- -3'
miRNA:   3'- -GCGCGGUacCGGCCgaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 40087 0.66 0.42353
Target:  5'- gGCGCCggGGCCGGCcccgGCGaggaCGgGg- -3'
miRNA:   3'- gCGCGGuaCCGGCCGa---CGCg---GCgCga -5'
29602 3' -65.7 NC_006151.1 + 41451 0.71 0.201554
Target:  5'- cCGCuGCCAccgauUGGCCGGCgggacgaugacgacgGCGaCCGCGUg -3'
miRNA:   3'- -GCG-CGGU-----ACCGGCCGa--------------CGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 45184 0.68 0.351568
Target:  5'- gCGUGCCcgccaccacGGaCGGCgacggggUGCGCCGCGCUc -3'
miRNA:   3'- -GCGCGGua-------CCgGCCG-------ACGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 46541 0.67 0.398837
Target:  5'- cCGCGgacgaCCAgaGGCCGGCgcccagGCGCucccCGCGCa -3'
miRNA:   3'- -GCGC-----GGUa-CCGGCCGa-----CGCG----GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 47695 0.7 0.242162
Target:  5'- aGCGCCAuuUGGCCGGUgcgGCGUCcCGg- -3'
miRNA:   3'- gCGCGGU--ACCGGCCGa--CGCGGcGCga -5'
29602 3' -65.7 NC_006151.1 + 49592 0.68 0.351568
Target:  5'- gGCGCCccGGCCagcgcGCUGCcgguccuggcgguGCUGCGCg -3'
miRNA:   3'- gCGCGGuaCCGGc----CGACG-------------CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 50008 0.7 0.253469
Target:  5'- gCGCGCCGcGcGCgCGGCccGCGCgGCGCc -3'
miRNA:   3'- -GCGCGGUaC-CG-GCCGa-CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 50175 0.68 0.344939
Target:  5'- aGCGC---GGCCGGCcGCGCCgGUGUUc -3'
miRNA:   3'- gCGCGguaCCGGCCGaCGCGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 50341 0.7 0.265208
Target:  5'- gGCGCC-UGGCCgcGGCcuccCGCCGCGUc -3'
miRNA:   3'- gCGCGGuACCGG--CCGac--GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 50438 0.7 0.267608
Target:  5'- gCGCGCCGgcGGCCugggcaccgcccgcgGGCgcucGCGCCaGCGCg -3'
miRNA:   3'- -GCGCGGUa-CCGG---------------CCGa---CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 50868 0.67 0.370452
Target:  5'- cCGCGCCcccggaccccgucccGgGGCCGGCcGCGCCcccCGCc -3'
miRNA:   3'- -GCGCGG---------------UaCCGGCCGaCGCGGc--GCGa -5'
29602 3' -65.7 NC_006151.1 + 51417 0.67 0.367384
Target:  5'- gCGCGugcacccguCCGUGGCCaugacGCgGaCGCCGCGCUc -3'
miRNA:   3'- -GCGC---------GGUACCGGc----CGaC-GCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 51796 0.66 0.449116
Target:  5'- cCGCuCCA-GGCUcaGGCccUGCGaCCGCGCg -3'
miRNA:   3'- -GCGcGGUaCCGG--CCG--ACGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 52020 0.72 0.196393
Target:  5'- cCGCGCCAgcuccucGGCgaaGGCcgGCGCCGuCGCg -3'
miRNA:   3'- -GCGCGGUa------CCGg--CCGa-CGCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 52093 0.67 0.390814
Target:  5'- aGCGCCGUcgaGaGCa-GC-GCGCCGCGCa -3'
miRNA:   3'- gCGCGGUA---C-CGgcCGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 52373 0.71 0.225991
Target:  5'- gCGCGCCcccggGGCCcgcgggggcGGCggGCGCCGcCGCg -3'
miRNA:   3'- -GCGCGGua---CCGG---------CCGa-CGCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 52472 0.66 0.466639
Target:  5'- gGCGCCGguaGGCCgccgugacGGCcucggGCGCCagcccgggGCGCUg -3'
miRNA:   3'- gCGCGGUa--CCGG--------CCGa----CGCGG--------CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 52893 0.69 0.298439
Target:  5'- gGCGCCGUgcgcacgaugguguaGGCCGGgaGCGUgaagaccacaaacUGCGCg -3'
miRNA:   3'- gCGCGGUA---------------CCGGCCgaCGCG-------------GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 53487 0.67 0.367384
Target:  5'- aGCgaGCCGUGGCaCGcgaaggccagguGCUcCGCCGCGCg -3'
miRNA:   3'- gCG--CGGUACCG-GC------------CGAcGCGGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.