miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 33944 0.68 0.316572
Target:  5'- gCGCGCCccgggGGCUcggGGCgggacgcgGCGcCCGCGCg -3'
miRNA:   3'- -GCGCGGua---CCGG---CCGa-------CGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 35216 0.66 0.440492
Target:  5'- gCGCGCCcauUGGCCcgGGCgagccgagaugGcCGCCGCGg- -3'
miRNA:   3'- -GCGCGGu--ACCGG--CCGa----------C-GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 35460 0.66 0.42353
Target:  5'- uCGCGaaaucCCAuUGGCCGGCggccgccaucuUGgGCCGgGCa -3'
miRNA:   3'- -GCGC-----GGU-ACCGGCCG-----------ACgCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 36513 0.69 0.289999
Target:  5'- --aGCCcgGGCCGGCgGCGCgGC-CUc -3'
miRNA:   3'- gcgCGGuaCCGGCCGaCGCGgCGcGA- -5'
29602 3' -65.7 NC_006151.1 + 36615 0.68 0.359792
Target:  5'- cCGcCGCCG-GGCCGGUcucgGCGCCcggcggcggcgGCGCc -3'
miRNA:   3'- -GC-GCGGUaCCGGCCGa---CGCGG-----------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 37149 0.67 0.380542
Target:  5'- cCGCGCCggGccgccaccgucuccGCCGGCgccCGCCGCGg- -3'
miRNA:   3'- -GCGCGGuaC--------------CGGCCGac-GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 37476 0.68 0.316572
Target:  5'- cCGCGCCGcGGCCGG--GC-CCGUGCc -3'
miRNA:   3'- -GCGCGGUaCCGGCCgaCGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 37771 0.7 0.247762
Target:  5'- aGCGCCGUGGCCa--UGaGCCGcCGCUa -3'
miRNA:   3'- gCGCGGUACCGGccgACgCGGC-GCGA- -5'
29602 3' -65.7 NC_006151.1 + 37844 0.68 0.35231
Target:  5'- aCGCcgaCAUGGCCuacccgGGCcGCGCCGCGg- -3'
miRNA:   3'- -GCGcg-GUACCGG------CCGaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 38008 0.67 0.39401
Target:  5'- aGCGCC-UGcugcccugcccgcuCCGGCUGC-CCGCGCc -3'
miRNA:   3'- gCGCGGuACc-------------GGCCGACGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 38048 0.69 0.299096
Target:  5'- cCGCGCCccGGCCGcccucgggcccGcCUGCcucgaggaggugacgGCCGCGCUg -3'
miRNA:   3'- -GCGCGGuaCCGGC-----------C-GACG---------------CGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 38275 0.68 0.33696
Target:  5'- aCGUgGCCGcGGCCcGGCUcgccgagGcCGCCGCGCg -3'
miRNA:   3'- -GCG-CGGUaCCGG-CCGA-------C-GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 38381 0.71 0.215726
Target:  5'- aGCGCCGgcGCCGGCgGCGgCGgGCg -3'
miRNA:   3'- gCGCGGUacCGGCCGaCGCgGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 38840 0.7 0.247762
Target:  5'- cCGCGUCccGGCCGGCgagacccacaCGCCGCGg- -3'
miRNA:   3'- -GCGCGGuaCCGGCCGac--------GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 39137 0.66 0.42353
Target:  5'- cCGCGCCc-GGCCugGGacccGCGCCGCGg- -3'
miRNA:   3'- -GCGCGGuaCCGG--CCga--CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 39317 0.73 0.17188
Target:  5'- gGCGCCGUGGaguaccucugcucgCGGCUcgGCGCgGCGCg -3'
miRNA:   3'- gCGCGGUACCg-------------GCCGA--CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 39464 0.77 0.087433
Target:  5'- uGCGCCGUGcGCUGGCccggGUGCCGCGa- -3'
miRNA:   3'- gCGCGGUAC-CGGCCGa---CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 39637 0.74 0.144047
Target:  5'- cCGCGCCG-GGCCccggaccccggucccGCUGcCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUaCCGGc--------------CGAC-GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 39688 0.66 0.465754
Target:  5'- gCGCGugcuccccaCCGUGGaCGGCUGCaaggacauggcccGCCaGCGCUc -3'
miRNA:   3'- -GCGC---------GGUACCgGCCGACG-------------CGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 39967 0.67 0.406966
Target:  5'- gGCGCCGUcGCCGccGCggGCGCCcCGCc -3'
miRNA:   3'- gCGCGGUAcCGGC--CGa-CGCGGcGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.