miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 16893 0.66 0.440492
Target:  5'- uCGCGuCCGUuGCCGcGCccgccccgGCGCCgGCGCa -3'
miRNA:   3'- -GCGC-GGUAcCGGC-CGa-------CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 16983 0.69 0.303062
Target:  5'- gGCGCCA-GGagCGGUUGUGgacCCGCGCg -3'
miRNA:   3'- gCGCGGUaCCg-GCCGACGC---GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 17110 0.68 0.323496
Target:  5'- gGCGCCggGGgcuCCGGCggcgGUGCUGCGg- -3'
miRNA:   3'- gCGCGGuaCC---GGCCGa---CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 17473 0.7 0.265208
Target:  5'- cCGCGgCGUGuccucGUCGGCggcGCGCCGCuGCUg -3'
miRNA:   3'- -GCGCgGUAC-----CGGCCGa--CGCGGCG-CGA- -5'
29602 3' -65.7 NC_006151.1 + 19003 0.67 0.375086
Target:  5'- gCGCGCCAccaGCCGcGCgcGCGCCG-GCg -3'
miRNA:   3'- -GCGCGGUac-CGGC-CGa-CGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 19886 0.75 0.118028
Target:  5'- aGCGCCAgGGCCagcagcgccagGaGCUGCGCgGCGCg -3'
miRNA:   3'- gCGCGGUaCCGG-----------C-CGACGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 20114 0.66 0.42353
Target:  5'- gGCGCCccggcgacggGGCUggggGGCggGCGCCGCGg- -3'
miRNA:   3'- gCGCGGua--------CCGG----CCGa-CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 20174 0.72 0.196393
Target:  5'- cCGCGCCcgggucgcGGCCGGUagaUGCGauuCCGCGCg -3'
miRNA:   3'- -GCGCGGua------CCGGCCG---ACGC---GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 20214 0.66 0.440492
Target:  5'- aGCGCCG-GGCCGcGCagGCGaCCcCGCc -3'
miRNA:   3'- gCGCGGUaCCGGC-CGa-CGC-GGcGCGa -5'
29602 3' -65.7 NC_006151.1 + 20306 0.67 0.406966
Target:  5'- gCGCccGCCGUGGCguuggCGGCgGCGagcaggaCGCGCg -3'
miRNA:   3'- -GCG--CGGUACCG-----GCCGaCGCg------GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 20777 0.72 0.178591
Target:  5'- gCGCGCCG-GGCgagCGGCUcGCGCuUGCGCa -3'
miRNA:   3'- -GCGCGGUaCCG---GCCGA-CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 25331 0.78 0.07512
Target:  5'- aGCGCCGggacGGCCGGC-GUGCCGCGa- -3'
miRNA:   3'- gCGCGGUa---CCGGCCGaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 27188 0.72 0.187306
Target:  5'- gGCGCCAgggGGCCGcGCagaagGCGCCggggccccGCGCg -3'
miRNA:   3'- gCGCGGUa--CCGGC-CGa----CGCGG--------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 28188 0.66 0.449116
Target:  5'- aGUGCCGUcGGCCGGgc-CGCCaCGCa -3'
miRNA:   3'- gCGCGGUA-CCGGCCgacGCGGcGCGa -5'
29602 3' -65.7 NC_006151.1 + 29048 0.66 0.42353
Target:  5'- gCGUGCCAagacucGaGuuGGCgGCGCCGCGg- -3'
miRNA:   3'- -GCGCGGUa-----C-CggCCGaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 30915 0.66 0.440492
Target:  5'- aGCGCCc--GCgGGCgGC-CCGCGCg -3'
miRNA:   3'- gCGCGGuacCGgCCGaCGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 31062 0.7 0.239951
Target:  5'- aCGCGCCAUuagagagGGCucugucugcagaaaCGGUgucuagGCGCCGCGCc -3'
miRNA:   3'- -GCGCGGUA-------CCG--------------GCCGa-----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 31343 0.7 0.247762
Target:  5'- gGCGCCGUGGgcccgaccCCGGUccGCGCCG-GCa -3'
miRNA:   3'- gCGCGGUACC--------GGCCGa-CGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 31686 0.67 0.406966
Target:  5'- cCGgGCCGccGaGCCGGCcGCGCCauuggGCGCc -3'
miRNA:   3'- -GCgCGGUa-C-CGGCCGaCGCGG-----CGCGa -5'
29602 3' -65.7 NC_006151.1 + 31757 0.73 0.154574
Target:  5'- aCGCGCCugcggcGGCgGGCgcGCGCCGgGCg -3'
miRNA:   3'- -GCGCGGua----CCGgCCGa-CGCGGCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.