miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 135428 0.71 0.231277
Target:  5'- gCGCGCCA-GGCacuccaGGUUGCGCUG-GCa -3'
miRNA:   3'- -GCGCGGUaCCGg-----CCGACGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 135365 0.74 0.127111
Target:  5'- cCGCGCguUGGCCGcgUGCGCCGCGa- -3'
miRNA:   3'- -GCGCGguACCGGCcgACGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 135166 0.68 0.359792
Target:  5'- gCGCgGCCcgGacgggcGCCGGCUGCcGCCGC-Cg -3'
miRNA:   3'- -GCG-CGGuaC------CGGCCGACG-CGGCGcGa -5'
29602 3' -65.7 NC_006151.1 + 134813 0.7 0.242162
Target:  5'- cCGCGCCGgacccGGaCGGUgGCGaCCGCGCg -3'
miRNA:   3'- -GCGCGGUa----CCgGCCGaCGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 133664 0.69 0.296475
Target:  5'- gGCGCU---GCCGGCgcgGCGgCGCGCc -3'
miRNA:   3'- gCGCGGuacCGGCCGa--CGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 133332 0.71 0.210745
Target:  5'- gCGCGCCGggcGGCCGGUUcCGCgGCGg- -3'
miRNA:   3'- -GCGCGGUa--CCGGCCGAcGCGgCGCga -5'
29602 3' -65.7 NC_006151.1 + 132843 0.68 0.316572
Target:  5'- aCG-GCCAccacgggcGGCCGGCccgGgGCCGCGCc -3'
miRNA:   3'- -GCgCGGUa-------CCGGCCGa--CgCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 132817 0.71 0.225991
Target:  5'- gCGCGUCcgGGCUGGCcGC-CCGCGg- -3'
miRNA:   3'- -GCGCGGuaCCGGCCGaCGcGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 132333 0.66 0.431962
Target:  5'- gCGCGCCGUGGCCacguacaGGUgcaggaagagccaggGgGCCagGCGCg -3'
miRNA:   3'- -GCGCGGUACCGG-------CCGa--------------CgCGG--CGCGa -5'
29602 3' -65.7 NC_006151.1 + 132139 0.68 0.337679
Target:  5'- uCGCGCCggcgGUGGUugaCGGCgcGCaGCUGCGCg -3'
miRNA:   3'- -GCGCGG----UACCG---GCCGa-CG-CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 132090 0.69 0.296475
Target:  5'- gGCGCCGUccuccucgaugaGGCCGGC-GCGCacgaGCGg- -3'
miRNA:   3'- gCGCGGUA------------CCGGCCGaCGCGg---CGCga -5'
29602 3' -65.7 NC_006151.1 + 131124 0.66 0.431962
Target:  5'- gGCGCgGgaGGCC-GCgGCGCCGCGg- -3'
miRNA:   3'- gCGCGgUa-CCGGcCGaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 130640 0.66 0.449116
Target:  5'- aGCGCCGccgaGGCCGcCUGCGgCGUGa- -3'
miRNA:   3'- gCGCGGUa---CCGGCcGACGCgGCGCga -5'
29602 3' -65.7 NC_006151.1 + 130345 0.72 0.196393
Target:  5'- gCGCGCCGcGGCgucgUGGUUGacgGCCGCGCg -3'
miRNA:   3'- -GCGCGGUaCCG----GCCGACg--CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 130295 0.73 0.158363
Target:  5'- gCGCGCCGgccgacGGCgCGGagcgcgcGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUa-----CCG-GCCga-----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 130021 0.68 0.323496
Target:  5'- gCGCGCCAcGGCCGucgugaGCcaGCGCaGCGCg -3'
miRNA:   3'- -GCGCGGUaCCGGC------CGa-CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 129854 0.67 0.367384
Target:  5'- aCG-GCC-UGGCCcaGGCccgugGCGUCGCGCg -3'
miRNA:   3'- -GCgCGGuACCGG--CCGa----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 129691 0.66 0.466639
Target:  5'- gGcCGCCGUGGaCC-GCgGCGCCGaGCa -3'
miRNA:   3'- gC-GCGGUACC-GGcCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 129548 0.66 0.457833
Target:  5'- gGcCGCCGUcaaccgcaGCUGGCgcaugacgGCGUCGCGCUg -3'
miRNA:   3'- gC-GCGGUAc-------CGGCCGa-------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 129340 0.67 0.406148
Target:  5'- gGCcCCGgggcGGCCGGC-GCGCCgauaaauGCGCUc -3'
miRNA:   3'- gCGcGGUa---CCGGCCGaCGCGG-------CGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.