miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 19886 0.75 0.118028
Target:  5'- aGCGCCAgGGCCagcagcgccagGaGCUGCGCgGCGCg -3'
miRNA:   3'- gCGCGGUaCCGG-----------C-CGACGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 135365 0.74 0.127111
Target:  5'- cCGCGCguUGGCCGcgUGCGCCGCGa- -3'
miRNA:   3'- -GCGCGguACCGGCcgACGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 85157 0.74 0.133521
Target:  5'- uGCGgCAgggGGCCGGCgccgcggGCGCCGcCGCc -3'
miRNA:   3'- gCGCgGUa--CCGGCCGa------CGCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 64947 0.74 0.133521
Target:  5'- aGCGCC-UGGCCGcGCUGCGg-GCGCa -3'
miRNA:   3'- gCGCGGuACCGGC-CGACGCggCGCGa -5'
29602 3' -65.7 NC_006151.1 + 113415 0.74 0.140228
Target:  5'- gCGCGCgCAcUGGCUGGCgcUGCGCCGCu-- -3'
miRNA:   3'- -GCGCG-GU-ACCGGCCG--ACGCGGCGcga -5'
29602 3' -65.7 NC_006151.1 + 136985 0.74 0.143696
Target:  5'- cCGCGCCG-GG-CGGCggGCGCgCGCGCa -3'
miRNA:   3'- -GCGCGGUaCCgGCCGa-CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 40035 0.74 0.143696
Target:  5'- cCGCGCCGccGCCGGggGCGCCGUGg- -3'
miRNA:   3'- -GCGCGGUacCGGCCgaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 39637 0.74 0.144047
Target:  5'- cCGCGCCG-GGCCccggaccccggucccGCUGcCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUaCCGGc--------------CGAC-GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 73315 0.73 0.147242
Target:  5'- cCGCGUccagCAUGGgCGGg-GCGCCGCGCg -3'
miRNA:   3'- -GCGCG----GUACCgGCCgaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 138699 0.73 0.147242
Target:  5'- aCGCGCUGaGcCCGGCgcugcGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUaCcGGCCGa----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 77973 0.73 0.147242
Target:  5'- cCGCGCCGguacGCCGaGCgcGCGCUGCGCg -3'
miRNA:   3'- -GCGCGGUac--CGGC-CGa-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 92203 0.73 0.153454
Target:  5'- aCGCGCCGccgcGGCCGcgcuggagcacgauGCUgcacGCGCCGCGCa -3'
miRNA:   3'- -GCGCGGUa---CCGGC--------------CGA----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 65812 0.73 0.1542
Target:  5'- aCGUGCCGcgguggaUGGgCGGCcGCGCCaGCGCg -3'
miRNA:   3'- -GCGCGGU-------ACCgGCCGaCGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 31757 0.73 0.154574
Target:  5'- aCGCGCCugcggcGGCgGGCgcGCGCCGgGCg -3'
miRNA:   3'- -GCGCGGua----CCGgCCGa-CGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 136808 0.73 0.154574
Target:  5'- cCGCGCuCGcGGCCGaC-GCGCCGCGCg -3'
miRNA:   3'- -GCGCG-GUaCCGGCcGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 135811 0.73 0.154574
Target:  5'- gCGCGCCGaGGCCGaGCUuuuagcGCGCCGCcccgGCg -3'
miRNA:   3'- -GCGCGGUaCCGGC-CGA------CGCGGCG----CGa -5'
29602 3' -65.7 NC_006151.1 + 102882 0.73 0.158363
Target:  5'- aCGcCGCgGUGGCgGGcCUGCGCCGC-CUc -3'
miRNA:   3'- -GC-GCGgUACCGgCC-GACGCGGCGcGA- -5'
29602 3' -65.7 NC_006151.1 + 2906 0.73 0.158363
Target:  5'- aGCaCgAUGaGCCGGCgccGCGCCGCGCc -3'
miRNA:   3'- gCGcGgUAC-CGGCCGa--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 130295 0.73 0.158363
Target:  5'- gCGCGCCGgccgacGGCgCGGagcgcgcGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUa-----CCG-GCCga-----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 99343 0.73 0.161066
Target:  5'- gCGCGCCGUcGGCugcacggcggucguCGGCgGCGUCGUGCa -3'
miRNA:   3'- -GCGCGGUA-CCG--------------GCCGaCGCGGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.