miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 99607 0.84 0.024146
Target:  5'- cCGCGCCG-GGCUGGCgcacaGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUaCCGGCCGa----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 113602 0.8 0.051199
Target:  5'- uGCGCCGUGGCCGaGCgccagGCGgacCCGCGCg -3'
miRNA:   3'- gCGCGGUACCGGC-CGa----CGC---GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 70637 0.79 0.059719
Target:  5'- gGCGCCGUGGCCGcGCgcgagGCGCCcguccucacGCGCg -3'
miRNA:   3'- gCGCGGUACCGGC-CGa----CGCGG---------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 59345 0.78 0.067854
Target:  5'- gCGCGCuCAgGGCCGcGCgcacgggGCGCCGCGCg -3'
miRNA:   3'- -GCGCG-GUaCCGGC-CGa------CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 71014 0.78 0.067854
Target:  5'- gGCGCCAUGcGCCGcgagcucgcggaGCUgcGCGCCGCGCg -3'
miRNA:   3'- gCGCGGUAC-CGGC------------CGA--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 76116 0.78 0.069604
Target:  5'- aCGCGCagcaucUGGUCGGCcGUGCCGCGCUc -3'
miRNA:   3'- -GCGCGgu----ACCGGCCGaCGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 104045 0.78 0.073236
Target:  5'- aGCGCCAgcucugggcgcgcgcGGCCGacgcggcGCUGCGCCGCGCc -3'
miRNA:   3'- gCGCGGUa--------------CCGGC-------CGACGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 81355 0.78 0.073236
Target:  5'- cCGCGCCcgGGgccCCGGCggGCGCCaGCGCg -3'
miRNA:   3'- -GCGCGGuaCC---GGCCGa-CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 25331 0.78 0.07512
Target:  5'- aGCGCCGggacGGCCGGC-GUGCCGCGa- -3'
miRNA:   3'- gCGCGGUa---CCGGCCGaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 125464 0.77 0.083129
Target:  5'- aGCGCCGUGGCCacGGCcGCGCUcggccaGCGCg -3'
miRNA:   3'- gCGCGGUACCGG--CCGaCGCGG------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 62016 0.77 0.087433
Target:  5'- gCGCGCCGcccUGGCgGccagccccccGCUGCGCCGCGUg -3'
miRNA:   3'- -GCGCGGU---ACCGgC----------CGACGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 39464 0.77 0.087433
Target:  5'- uGCGCCGUGcGCUGGCccggGUGCCGCGa- -3'
miRNA:   3'- gCGCGGUAC-CGGCCGa---CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 102343 0.77 0.089439
Target:  5'- gCGCGCUgcuggacGUGGCCGGCgacgacGCGuCCGCGCc -3'
miRNA:   3'- -GCGCGG-------UACCGGCCGa-----CGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 120755 0.77 0.089664
Target:  5'- cCGCGUCAUGGCCugGGUgcgGCGCC-CGCUg -3'
miRNA:   3'- -GCGCGGUACCGG--CCGa--CGCGGcGCGA- -5'
29602 3' -65.7 NC_006151.1 + 100621 0.76 0.091949
Target:  5'- gCGCGCUggGaccuggucagcGCCGcGCUGCGCCGCGCc -3'
miRNA:   3'- -GCGCGGuaC-----------CGGC-CGACGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 100228 0.76 0.094289
Target:  5'- gGCGCCGUGGCCGaGCgcguggugGCGCUcgaGCGCc -3'
miRNA:   3'- gCGCGGUACCGGC-CGa-------CGCGG---CGCGa -5'
29602 3' -65.7 NC_006151.1 + 119039 0.76 0.104224
Target:  5'- gGCGCCAaGGaCGGCgGCGCCGCGg- -3'
miRNA:   3'- gCGCGGUaCCgGCCGaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 106496 0.75 0.106857
Target:  5'- aCGgGCCAgcGGCUGGCgcGCGCCGUGCc -3'
miRNA:   3'- -GCgCGGUa-CCGGCCGa-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 99075 0.75 0.118028
Target:  5'- uGCGCCcgGGCaccguGGCgcgGCGCCuGCGCa -3'
miRNA:   3'- gCGCGGuaCCGg----CCGa--CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 19886 0.75 0.118028
Target:  5'- aGCGCCAgGGCCagcagcgccagGaGCUGCGCgGCGCg -3'
miRNA:   3'- gCGCGGUaCCGG-----------C-CGACGCGgCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.