miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 119807 0.66 0.466639
Target:  5'- -aCGCCGgcuuCCGGCacGCGCUGCGCg -3'
miRNA:   3'- gcGCGGUacc-GGCCGa-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 88197 0.66 0.466639
Target:  5'- gGCGgCGUGGUCGGaccagGCGaggCGCGCc -3'
miRNA:   3'- gCGCgGUACCGGCCga---CGCg--GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 5079 0.66 0.466639
Target:  5'- aGgGCCGcggGGCCgcGGCggGCGCCG-GCg -3'
miRNA:   3'- gCgCGGUa--CCGG--CCGa-CGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 64290 0.66 0.466639
Target:  5'- aGCGCCGcguUGuCgGGCgugccgcagcGCGCCGUGCUg -3'
miRNA:   3'- gCGCGGU---ACcGgCCGa---------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 142313 0.66 0.466639
Target:  5'- aGCGCCGUaugggGGCCcGCgcgcucgcgGCGCC-CGCUu -3'
miRNA:   3'- gCGCGGUA-----CCGGcCGa--------CGCGGcGCGA- -5'
29602 3' -65.7 NC_006151.1 + 14833 0.66 0.466639
Target:  5'- cCGCGcCCAUGGaCCGGguCUGgGCCGa-CUg -3'
miRNA:   3'- -GCGC-GGUACC-GGCC--GACgCGGCgcGA- -5'
29602 3' -65.7 NC_006151.1 + 52472 0.66 0.466639
Target:  5'- gGCGCCGguaGGCCgccgugacGGCcucggGCGCCagcccgggGCGCUg -3'
miRNA:   3'- gCGCGGUa--CCGG--------CCGa----CGCGG--------CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 129691 0.66 0.466639
Target:  5'- gGcCGCCGUGGaCC-GCgGCGCCGaGCa -3'
miRNA:   3'- gC-GCGGUACC-GGcCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 39688 0.66 0.465754
Target:  5'- gCGCGugcuccccaCCGUGGaCGGCUGCaaggacauggcccGCCaGCGCUc -3'
miRNA:   3'- -GCGC---------GGUACCgGCCGACG-------------CGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 89830 0.66 0.457833
Target:  5'- aGCGCgAUGcuGCCGGCguagGCGUgggUGUGCg -3'
miRNA:   3'- gCGCGgUAC--CGGCCGa---CGCG---GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 90341 0.66 0.457833
Target:  5'- gGCGCagCAUGGCCaugaGGCUGgcgaCGCCGaGCa -3'
miRNA:   3'- gCGCG--GUACCGG----CCGAC----GCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 96389 0.66 0.457833
Target:  5'- gCGCGCgGUG-CCGGCgcacgGCGgCCGCcaccGCg -3'
miRNA:   3'- -GCGCGgUACcGGCCGa----CGC-GGCG----CGa -5'
29602 3' -65.7 NC_006151.1 + 101100 0.66 0.457833
Target:  5'- gGgGCCcgGGUCgGGCgucucGUGCCuGCGCUc -3'
miRNA:   3'- gCgCGGuaCCGG-CCGa----CGCGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 138184 0.66 0.457833
Target:  5'- aCGUgGCCAUGGCgccCGuGCUGCGgcaccucgaCGCGCa -3'
miRNA:   3'- -GCG-CGGUACCG---GC-CGACGCg--------GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 64381 0.66 0.457833
Target:  5'- uCGagGCCGUGGCCaGCc-CGCgGCGCa -3'
miRNA:   3'- -GCg-CGGUACCGGcCGacGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 101570 0.66 0.457833
Target:  5'- aCGCGCaCGUcGCgGGCUaCGCCGCcaGCg -3'
miRNA:   3'- -GCGCG-GUAcCGgCCGAcGCGGCG--CGa -5'
29602 3' -65.7 NC_006151.1 + 103678 0.66 0.457833
Target:  5'- gGCGCgCGcGGCgGGg-GUGCUGCGCg -3'
miRNA:   3'- gCGCG-GUaCCGgCCgaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 127556 0.66 0.457833
Target:  5'- uCGuCGUCGUGGCCGccGCcgGCGCCuCGUUc -3'
miRNA:   3'- -GC-GCGGUACCGGC--CGa-CGCGGcGCGA- -5'
29602 3' -65.7 NC_006151.1 + 129548 0.66 0.457833
Target:  5'- gGcCGCCGUcaaccgcaGCUGGCgcaugacgGCGUCGCGCUg -3'
miRNA:   3'- gC-GCGGUAc-------CGGCCGa-------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 59866 0.66 0.457833
Target:  5'- aGCuGCCGcagcaccgcUGGCUGGCgaagGCGUccaggCGCGCg -3'
miRNA:   3'- gCG-CGGU---------ACCGGCCGa---CGCG-----GCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.