Results 1 - 20 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29602 | 3' | -65.7 | NC_006151.1 | + | 1833 | 0.66 | 0.440492 |
Target: 5'- aGCGCCGccgGGCCgaggggaccgaGGCcGcCGCCGCGg- -3' miRNA: 3'- gCGCGGUa--CCGG-----------CCGaC-GCGGCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 2109 | 0.73 | 0.166194 |
Target: 5'- gCGgGCCGcggGGCCGGCcGuCGCCGcCGCg -3' miRNA: 3'- -GCgCGGUa--CCGGCCGaC-GCGGC-GCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 2171 | 0.66 | 0.440492 |
Target: 5'- -uCGCCggGGCCGGCcccgGCGCC-CGa- -3' miRNA: 3'- gcGCGGuaCCGGCCGa---CGCGGcGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 2268 | 0.67 | 0.406966 |
Target: 5'- aGUcCCAgagcacGGCCGGCgggGCGCC-CGCg -3' miRNA: 3'- gCGcGGUa-----CCGGCCGa--CGCGGcGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 2375 | 0.66 | 0.431962 |
Target: 5'- gCGCGCaacucGGCCGGCaggcccucgGgGCCGCGg- -3' miRNA: 3'- -GCGCGgua--CCGGCCGa--------CgCGGCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 2461 | 0.66 | 0.414369 |
Target: 5'- gGCGCCGagcccccagcgguUGGCCGcGCgGUGCCcgaaggcgGCGCc -3' miRNA: 3'- gCGCGGU-------------ACCGGC-CGaCGCGG--------CGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 2906 | 0.73 | 0.158363 |
Target: 5'- aGCaCgAUGaGCCGGCgccGCGCCGCGCc -3' miRNA: 3'- gCGcGgUAC-CGGCCGa--CGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 3246 | 0.67 | 0.398837 |
Target: 5'- gGCGCgGcGGCgGaGCgggGCGCCGCGg- -3' miRNA: 3'- gCGCGgUaCCGgC-CGa--CGCGGCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 3286 | 0.73 | 0.162236 |
Target: 5'- uGCGCCAgggcGGCCGGgUcgaaggugaGCGCCGgGCg -3' miRNA: 3'- gCGCGGUa---CCGGCCgA---------CGCGGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 3613 | 0.69 | 0.277383 |
Target: 5'- uCGCggugGCCGUGGCCGuccccGCggaGgGCCGCGCc -3' miRNA: 3'- -GCG----CGGUACCGGC-----CGa--CgCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 3873 | 0.67 | 0.406966 |
Target: 5'- gGCGCCc--GCCGccGCcgGCGCCgGCGCUg -3' miRNA: 3'- gCGCGGuacCGGC--CGa-CGCGG-CGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 4318 | 0.68 | 0.359792 |
Target: 5'- gGgGCaCGcGGCCgGGCUGCGCgGCGg- -3' miRNA: 3'- gCgCG-GUaCCGG-CCGACGCGgCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 5079 | 0.66 | 0.466639 |
Target: 5'- aGgGCCGcggGGCCgcGGCggGCGCCG-GCg -3' miRNA: 3'- gCgCGGUa--CCGG--CCGa-CGCGGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 5350 | 0.66 | 0.42353 |
Target: 5'- gGCGCCcucuCCGGCgcgGCGCCG-GCg -3' miRNA: 3'- gCGCGGuaccGGCCGa--CGCGGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 5699 | 0.68 | 0.337679 |
Target: 5'- gGCGCUgcGGCCaccGCUGCugGCUGUGCUg -3' miRNA: 3'- gCGCGGuaCCGGc--CGACG--CGGCGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 5732 | 0.69 | 0.303062 |
Target: 5'- gGCGCCggGGUCcgaGGCcGCGCCGCcgGCc -3' miRNA: 3'- gCGCGGuaCCGG---CCGaCGCGGCG--CGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 6236 | 0.66 | 0.415197 |
Target: 5'- gGCGCCggGaGCCcuGGCUGCcGCCGuCGg- -3' miRNA: 3'- gCGCGGuaC-CGG--CCGACG-CGGC-GCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 8247 | 0.7 | 0.236667 |
Target: 5'- aGgGCCG-GGCCGGC-GCGCCGggaCGCc -3' miRNA: 3'- gCgCGGUaCCGGCCGaCGCGGC---GCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 14833 | 0.66 | 0.466639 |
Target: 5'- cCGCGcCCAUGGaCCGGguCUGgGCCGa-CUg -3' miRNA: 3'- -GCGC-GGUACC-GGCC--GACgCGGCgcGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 15281 | 0.66 | 0.449116 |
Target: 5'- aGCGCCcc-GCUGcGCagcGCGCUGCGCg -3' miRNA: 3'- gCGCGGuacCGGC-CGa--CGCGGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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