miRNA display CGI


Results 1 - 20 of 352 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 1833 0.66 0.440492
Target:  5'- aGCGCCGccgGGCCgaggggaccgaGGCcGcCGCCGCGg- -3'
miRNA:   3'- gCGCGGUa--CCGG-----------CCGaC-GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 2109 0.73 0.166194
Target:  5'- gCGgGCCGcggGGCCGGCcGuCGCCGcCGCg -3'
miRNA:   3'- -GCgCGGUa--CCGGCCGaC-GCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 2171 0.66 0.440492
Target:  5'- -uCGCCggGGCCGGCcccgGCGCC-CGa- -3'
miRNA:   3'- gcGCGGuaCCGGCCGa---CGCGGcGCga -5'
29602 3' -65.7 NC_006151.1 + 2268 0.67 0.406966
Target:  5'- aGUcCCAgagcacGGCCGGCgggGCGCC-CGCg -3'
miRNA:   3'- gCGcGGUa-----CCGGCCGa--CGCGGcGCGa -5'
29602 3' -65.7 NC_006151.1 + 2375 0.66 0.431962
Target:  5'- gCGCGCaacucGGCCGGCaggcccucgGgGCCGCGg- -3'
miRNA:   3'- -GCGCGgua--CCGGCCGa--------CgCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 2461 0.66 0.414369
Target:  5'- gGCGCCGagcccccagcgguUGGCCGcGCgGUGCCcgaaggcgGCGCc -3'
miRNA:   3'- gCGCGGU-------------ACCGGC-CGaCGCGG--------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 2906 0.73 0.158363
Target:  5'- aGCaCgAUGaGCCGGCgccGCGCCGCGCc -3'
miRNA:   3'- gCGcGgUAC-CGGCCGa--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 3246 0.67 0.398837
Target:  5'- gGCGCgGcGGCgGaGCgggGCGCCGCGg- -3'
miRNA:   3'- gCGCGgUaCCGgC-CGa--CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 3286 0.73 0.162236
Target:  5'- uGCGCCAgggcGGCCGGgUcgaaggugaGCGCCGgGCg -3'
miRNA:   3'- gCGCGGUa---CCGGCCgA---------CGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 3613 0.69 0.277383
Target:  5'- uCGCggugGCCGUGGCCGuccccGCggaGgGCCGCGCc -3'
miRNA:   3'- -GCG----CGGUACCGGC-----CGa--CgCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 3873 0.67 0.406966
Target:  5'- gGCGCCc--GCCGccGCcgGCGCCgGCGCUg -3'
miRNA:   3'- gCGCGGuacCGGC--CGa-CGCGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 4318 0.68 0.359792
Target:  5'- gGgGCaCGcGGCCgGGCUGCGCgGCGg- -3'
miRNA:   3'- gCgCG-GUaCCGG-CCGACGCGgCGCga -5'
29602 3' -65.7 NC_006151.1 + 5079 0.66 0.466639
Target:  5'- aGgGCCGcggGGCCgcGGCggGCGCCG-GCg -3'
miRNA:   3'- gCgCGGUa--CCGG--CCGa-CGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 5350 0.66 0.42353
Target:  5'- gGCGCCcucuCCGGCgcgGCGCCG-GCg -3'
miRNA:   3'- gCGCGGuaccGGCCGa--CGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 5699 0.68 0.337679
Target:  5'- gGCGCUgcGGCCaccGCUGCugGCUGUGCUg -3'
miRNA:   3'- gCGCGGuaCCGGc--CGACG--CGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 5732 0.69 0.303062
Target:  5'- gGCGCCggGGUCcgaGGCcGCGCCGCcgGCc -3'
miRNA:   3'- gCGCGGuaCCGG---CCGaCGCGGCG--CGa -5'
29602 3' -65.7 NC_006151.1 + 6236 0.66 0.415197
Target:  5'- gGCGCCggGaGCCcuGGCUGCcGCCGuCGg- -3'
miRNA:   3'- gCGCGGuaC-CGG--CCGACG-CGGC-GCga -5'
29602 3' -65.7 NC_006151.1 + 8247 0.7 0.236667
Target:  5'- aGgGCCG-GGCCGGC-GCGCCGggaCGCc -3'
miRNA:   3'- gCgCGGUaCCGGCCGaCGCGGC---GCGa -5'
29602 3' -65.7 NC_006151.1 + 14833 0.66 0.466639
Target:  5'- cCGCGcCCAUGGaCCGGguCUGgGCCGa-CUg -3'
miRNA:   3'- -GCGC-GGUACC-GGCC--GACgCGGCgcGA- -5'
29602 3' -65.7 NC_006151.1 + 15281 0.66 0.449116
Target:  5'- aGCGCCcc-GCUGcGCagcGCGCUGCGCg -3'
miRNA:   3'- gCGCGGuacCGGC-CGa--CGCGGCGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.