miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 142313 0.66 0.466639
Target:  5'- aGCGCCGUaugggGGCCcGCgcgcucgcgGCGCC-CGCUu -3'
miRNA:   3'- gCGCGGUA-----CCGGcCGa--------CGCGGcGCGA- -5'
29602 3' -65.7 NC_006151.1 + 141841 0.66 0.415197
Target:  5'- cCGCGCuCGacGCgaggGGCUcGCGCCGCGCc -3'
miRNA:   3'- -GCGCG-GUacCGg---CCGA-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 140474 0.68 0.359792
Target:  5'- aCGCGC--UGGacucccacaaaaCCGGCUGCGaCGCGCc -3'
miRNA:   3'- -GCGCGguACC------------GGCCGACGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 139641 0.66 0.445655
Target:  5'- gGCGCCGgcgcgggggucgcGGCgGGC-GCGCCGCcCg -3'
miRNA:   3'- gCGCGGUa------------CCGgCCGaCGCGGCGcGa -5'
29602 3' -65.7 NC_006151.1 + 138959 0.72 0.191803
Target:  5'- uCGCcugguaCAUGGCCGaGCUcgcgacgcgccGCGCCGCGCUc -3'
miRNA:   3'- -GCGcg----GUACCGGC-CGA-----------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 138699 0.73 0.147242
Target:  5'- aCGCGCUGaGcCCGGCgcugcGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUaCcGGCCGa----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 138184 0.66 0.457833
Target:  5'- aCGUgGCCAUGGCgccCGuGCUGCGgcaccucgaCGCGCa -3'
miRNA:   3'- -GCG-CGGUACCG---GC-CGACGCg--------GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 137672 0.69 0.303062
Target:  5'- aGCGCCc--GCCGuGCgGCuGCCGCGCc -3'
miRNA:   3'- gCGCGGuacCGGC-CGaCG-CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 137295 0.73 0.162236
Target:  5'- gGCgGCCAUGcGCgGGUUcCGCCGCGCg -3'
miRNA:   3'- gCG-CGGUAC-CGgCCGAcGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 137151 0.66 0.457833
Target:  5'- gGCGCCGgagaUGGCCGcGCacgaGCcgGCgGCGCa -3'
miRNA:   3'- gCGCGGU----ACCGGC-CGa---CG--CGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 137087 0.67 0.387634
Target:  5'- gGCGCCAggccuucgcggugcUGGCCggggacgccugggGGCgcgcgacgGCGCgGCGCg -3'
miRNA:   3'- gCGCGGU--------------ACCGG-------------CCGa-------CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 136985 0.74 0.143696
Target:  5'- cCGCGCCG-GG-CGGCggGCGCgCGCGCa -3'
miRNA:   3'- -GCGCGGUaCCgGCCGa-CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 136942 0.7 0.27124
Target:  5'- gGCGCCGacgGcGCCGucCUGCGCCGCcuGCUg -3'
miRNA:   3'- gCGCGGUa--C-CGGCc-GACGCGGCG--CGA- -5'
29602 3' -65.7 NC_006151.1 + 136844 0.68 0.323496
Target:  5'- aCGCgGCC---GCCGGCcucgcGCGCCGCGUg -3'
miRNA:   3'- -GCG-CGGuacCGGCCGa----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 136808 0.73 0.154574
Target:  5'- cCGCGCuCGcGGCCGaC-GCGCCGCGCg -3'
miRNA:   3'- -GCGCG-GUaCCGGCcGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 136756 0.66 0.415197
Target:  5'- gCGCGCCucgccCCGGCcauggGCGCCG-GCUa -3'
miRNA:   3'- -GCGCGGuacc-GGCCGa----CGCGGCgCGA- -5'
29602 3' -65.7 NC_006151.1 + 136416 0.68 0.329823
Target:  5'- aCGCGCgG-GGCCccgcggcGGCgcaCGCCGCGCg -3'
miRNA:   3'- -GCGCGgUaCCGG-------CCGac-GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 136077 0.68 0.359039
Target:  5'- aCGCGCCGgagcGCCcGCUGCGCUccaucgcggucggGCGCc -3'
miRNA:   3'- -GCGCGGUac--CGGcCGACGCGG-------------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 135811 0.73 0.154574
Target:  5'- gCGCGCCGaGGCCGaGCUuuuagcGCGCCGCcccgGCg -3'
miRNA:   3'- -GCGCGGUaCCGGC-CGA------CGCGGCG----CGa -5'
29602 3' -65.7 NC_006151.1 + 135470 0.67 0.398837
Target:  5'- gCGCGCCAgcguguccGcGCgGGCcagGCGgCGCGCg -3'
miRNA:   3'- -GCGCGGUa-------C-CGgCCGa--CGCgGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.