miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 64381 0.66 0.457833
Target:  5'- uCGagGCCGUGGCCaGCc-CGCgGCGCa -3'
miRNA:   3'- -GCg-CGGUACCGGcCGacGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 15281 0.66 0.449116
Target:  5'- aGCGCCcc-GCUGcGCagcGCGCUGCGCg -3'
miRNA:   3'- gCGCGGuacCGGC-CGa--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 54100 0.66 0.449116
Target:  5'- gGCgGCCAU-GUCGGCUGCGaCgGCGg- -3'
miRNA:   3'- gCG-CGGUAcCGGCCGACGC-GgCGCga -5'
29602 3' -65.7 NC_006151.1 + 130640 0.66 0.449116
Target:  5'- aGCGCCGccgaGGCCGcCUGCGgCGUGa- -3'
miRNA:   3'- gCGCGGUa---CCGGCcGACGCgGCGCga -5'
29602 3' -65.7 NC_006151.1 + 28188 0.66 0.449116
Target:  5'- aGUGCCGUcGGCCGGgc-CGCCaCGCa -3'
miRNA:   3'- gCGCGGUA-CCGGCCgacGCGGcGCGa -5'
29602 3' -65.7 NC_006151.1 + 51796 0.66 0.449116
Target:  5'- cCGCuCCA-GGCUcaGGCccUGCGaCCGCGCg -3'
miRNA:   3'- -GCGcGGUaCCGG--CCG--ACGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 62187 0.66 0.449116
Target:  5'- gGcCGCCcUGGCCGuguucacgcuGCUgGCGCUgGCGCUg -3'
miRNA:   3'- gC-GCGGuACCGGC----------CGA-CGCGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 63491 0.66 0.449116
Target:  5'- gGCGCCcgaagaagGUGGCCaGGUgGgGgCGCGCg -3'
miRNA:   3'- gCGCGG--------UACCGG-CCGaCgCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 129147 0.66 0.449116
Target:  5'- aGCGCCGgcgcacacUGGCucuCGGCcaCGUCGCGCa -3'
miRNA:   3'- gCGCGGU--------ACCG---GCCGacGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 117234 0.66 0.449116
Target:  5'- aCGCGCgCGUccacgucggcgGGCCcgaGGCgcGgGCCGCGCg -3'
miRNA:   3'- -GCGCG-GUA-----------CCGG---CCGa-CgCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 114140 0.66 0.449116
Target:  5'- cCGCcgaGCCGcGGCUcgGGCgcaGCGaCCGCGCg -3'
miRNA:   3'- -GCG---CGGUaCCGG--CCGa--CGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 139641 0.66 0.445655
Target:  5'- gGCGCCGgcgcgggggucgcGGCgGGC-GCGCCGCcCg -3'
miRNA:   3'- gCGCGGUa------------CCGgCCGaCGCGGCGcGa -5'
29602 3' -65.7 NC_006151.1 + 60625 0.66 0.440492
Target:  5'- cCGcCGCCGUcgucggggcggGGCuccCGGCccGCGCCGCGUc -3'
miRNA:   3'- -GC-GCGGUA-----------CCG---GCCGa-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 92671 0.66 0.440492
Target:  5'- uGCuGCCGgcGGCCGgggacgcgcGCU-CGCCGCGCg -3'
miRNA:   3'- gCG-CGGUa-CCGGC---------CGAcGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 16893 0.66 0.440492
Target:  5'- uCGCGuCCGUuGCCGcGCccgccccgGCGCCgGCGCa -3'
miRNA:   3'- -GCGC-GGUAcCGGC-CGa-------CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 2171 0.66 0.440492
Target:  5'- -uCGCCggGGCCGGCcccgGCGCC-CGa- -3'
miRNA:   3'- gcGCGGuaCCGGCCGa---CGCGGcGCga -5'
29602 3' -65.7 NC_006151.1 + 101279 0.66 0.440492
Target:  5'- -uCGUCuacgagGGCgCgGGCgGCGCCGCGCUg -3'
miRNA:   3'- gcGCGGua----CCG-G-CCGaCGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 35216 0.66 0.440492
Target:  5'- gCGCGCCcauUGGCCcgGGCgagccgagaugGcCGCCGCGg- -3'
miRNA:   3'- -GCGCGGu--ACCGG--CCGa----------C-GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 30915 0.66 0.440492
Target:  5'- aGCGCCc--GCgGGCgGC-CCGCGCg -3'
miRNA:   3'- gCGCGGuacCGgCCGaCGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 20214 0.66 0.440492
Target:  5'- aGCGCCG-GGCCGcGCagGCGaCCcCGCc -3'
miRNA:   3'- gCGCGGUaCCGGC-CGa-CGC-GGcGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.