miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 3286 0.73 0.162236
Target:  5'- uGCGCCAgggcGGCCGGgUcgaaggugaGCGCCGgGCg -3'
miRNA:   3'- gCGCGGUa---CCGGCCgA---------CGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 137295 0.73 0.162236
Target:  5'- gGCgGCCAUGcGCgGGUUcCGCCGCGCg -3'
miRNA:   3'- gCG-CGGUAC-CGgCCGAcGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 2109 0.73 0.166194
Target:  5'- gCGgGCCGcggGGCCGGCcGuCGCCGcCGCg -3'
miRNA:   3'- -GCgCGGUa--CCGGCCGaC-GCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 123027 0.73 0.169016
Target:  5'- gGaCGCCGUGGCgugggcggaccugcCGGCcgcgGCGCUGCGCg -3'
miRNA:   3'- gC-GCGGUACCG--------------GCCGa---CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 64621 0.73 0.170238
Target:  5'- cCGCGCCGccGGCCGcGggGCGCgGCGCc -3'
miRNA:   3'- -GCGCGGUa-CCGGC-CgaCGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 129114 0.73 0.170238
Target:  5'- aGCGCCAgGGCCgaGGC-GCGCUGgGCg -3'
miRNA:   3'- gCGCGGUaCCGG--CCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 103261 0.73 0.170238
Target:  5'- cCGCGCCAUGGgCGGCcacGUGCugagccaggagaCGCGCg -3'
miRNA:   3'- -GCGCGGUACCgGCCGa--CGCG------------GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 39317 0.73 0.17188
Target:  5'- gGCGCCGUGGaguaccucugcucgCGGCUcgGCGCgGCGCg -3'
miRNA:   3'- gCGCGGUACCg-------------GCCGA--CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 102233 0.72 0.17437
Target:  5'- gGCGCCGUGcGCCGu---CGCCGCGCUc -3'
miRNA:   3'- gCGCGGUAC-CGGCcgacGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 92148 0.72 0.17437
Target:  5'- gGCGCCAaGGCCaucauGGCcGCgGCCGUGCg -3'
miRNA:   3'- gCGCGGUaCCGG-----CCGaCG-CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 20777 0.72 0.178591
Target:  5'- gCGCGCCG-GGCgagCGGCUcGCGCuUGCGCa -3'
miRNA:   3'- -GCGCGGUaCCG---GCCGA-CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 75115 0.72 0.181167
Target:  5'- gGCGCCAgcagcuggucggcGGCCGGCgGCGCggcccaGCGCg -3'
miRNA:   3'- gCGCGGUa------------CCGGCCGaCGCGg-----CGCGa -5'
29602 3' -65.7 NC_006151.1 + 90941 0.72 0.182903
Target:  5'- aGCGUCAUGGCgaagGGCUcCGUCGCGCc -3'
miRNA:   3'- gCGCGGUACCGg---CCGAcGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 103788 0.72 0.187306
Target:  5'- aGCGC--UGGCgGcGCUGCagGCCGCGCUg -3'
miRNA:   3'- gCGCGguACCGgC-CGACG--CGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 87613 0.72 0.187306
Target:  5'- gGcCGCCGUGGCCuGCcaGCGCgGCGCc -3'
miRNA:   3'- gC-GCGGUACCGGcCGa-CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 27188 0.72 0.187306
Target:  5'- gGCGCCAgggGGCCGcGCagaagGCGCCggggccccGCGCg -3'
miRNA:   3'- gCGCGGUa--CCGGC-CGa----CGCGG--------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 128166 0.72 0.190896
Target:  5'- gCGCGCgAUGGCguaguugaaccaGGCgagcGUGCCGCGCUc -3'
miRNA:   3'- -GCGCGgUACCGg-----------CCGa---CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 120342 0.72 0.191803
Target:  5'- gCGCGCCcgcGUGGCCgGGCUcgcggGCGCCuaccaGCGCc -3'
miRNA:   3'- -GCGCGG---UACCGG-CCGA-----CGCGG-----CGCGa -5'
29602 3' -65.7 NC_006151.1 + 138959 0.72 0.191803
Target:  5'- uCGCcugguaCAUGGCCGaGCUcgcgacgcgccGCGCCGCGCUc -3'
miRNA:   3'- -GCGcg----GUACCGGC-CGA-----------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 85440 0.72 0.196393
Target:  5'- cCGCGCCGcGGCCGccuucCUGgGCCGCGg- -3'
miRNA:   3'- -GCGCGGUaCCGGCc----GACgCGGCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.